PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04881.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 286aa MW: 32071.4 Da PI: 7.9006

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04881.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.4e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ Dr04881.1 3 KRVLCKFFAH-GACLKGEHCDFSHD 26 99**6666.***********5 PP
2	zf-CCCH	28.3	3.1e-09	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ Dr04881.1 34 ICTFYQK-GVCTYGSRCRYDHV 54 7****.***********7 PP
3	zf-CCCH	18.3	4.1e-06	131	153	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C +Hg Dr04881.1 131 QPICS-FAAAGSCPHGENCAHIHG 153 68899.*************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MSKRVLCKFF AHGACLKGEH CDFSHDWKDQ ANNICTFYQK GVCTYGSRCR YDHVKVTRHQ 60 PSVPSSSSNA HPRAVLSSNQ IVHPTEVVTV NEQTTRHASG HGKAAWTPQS NEAHAFQDSE 120 DRHCPASLAD QPICSFAAAG SCPHGENCAH IHGDLCAICG KQCLHPYRPD EREEHIKLCT 180 KNNMRLEALR LSQDIECCVC LERVLLKPTA AERKFGLLSE CDHPFCISCI RNWRSNSPAS 240 GMDVNAALRA CPICRKLSYF VIPSVIWYSS KEEKQEIIDN YKAKLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-116	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr04881.1