PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04761.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

FAR1

Protein Properties

Length: 722aa MW: 82760.6 Da PI: 7.4937

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04761.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.3	3.5e-25	58	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA+ +GFsvr+sk+ ++++ + rtfvCsk+g+r+++k + +++r+ trtgC a+l++k + +g+++vt++ + HnH+la Dr04761.1 58 EFYNKYAEIMGFSVRRSKMWTTSK-DVLAARTFVCSKQGFRQKKKGF--EPKKPRPATRTGCPACLTIKITPTGRYRVTDFISGHNHQLA 144 6******************955.559***********9988..999**********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MLLPPISIHS PSSISSTRSI QVPLISQWIN QMGGVDVGNA PWVPQVEMQF GNEDEAYEFY 60 NKYAEIMGFS VRRSKMWTTS KDVLAARTFV CSKQGFRQKK KGFEPKKPRP ATRTGCPACL 120 TIKITPTGRY RVTDFISGHN HQLANPLTSH TLRSHRPKTK GRFSELDSME DPKMVGRTSQ 180 GHSFQKSMVK GDAGAVLEYL QKMQVENPLF YYAVRINESD NMSGFFWADA KSMMDYIYFG 240 DVVCFDTTYK TSDYGRPLIL FLGVNHHKQL VLFGTALLYD GSRESYAWLF ETFKTVMRGK 300 QPKAFLSDRS EEISDVIAEV WPGAAQRLCV WHLFQNATMQ LSQVFEGSKT FASEFSRCIF 360 ECEEVEEFVS AWESLIEKYD LKDNEWLVKQ FEERERWGLP FGRDVFCADF SSTLVKENWN 420 TFLKKGLGQN VDMLQFLEHY DKVVEERRNA EMRADFNACQ SLPRIPSFRM LKQAASAYTP 480 AIFKVFEKEF ELHMDCMVYS CGEIGATSDY KVIVEEKPKP HFVRYDSVTG TLLCSCKKFE 540 FAGIQCRHVF KVLDFRNIKE LPSQYILKRW RKDAKIGTIR HDSGYIMEND PKSSFARRYN 600 YLCYILSSIA ARAAKTTESS NFIESQMNLL SEQVEQLLHS RPFQIPYLIS ATSNEQRDVL 660 ESLADSLQHD SNAEAGFVGG ATNGNLIFKV ILALFQAKSM GPFMITISMQ SDMPDSIWVI 720 LE

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MLLPPISIHS PSSISSTRSI QVPLISQWIN QMGGVDVGNA PWVPQVEMQF GNEDEAYEFY  60
NKYAEIMGFS VRRSKMWTTS KDVLAARTFV CSKQGFRQKK KGFEPKKPRP ATRTGCPACL  120
TIKITPTGRY RVTDFISGHN HQLANPLTSH TLRSHRPKTK GRFSELDSME DPKMVGRTSQ  180
GHSFQKSMVK GDAGAVLEYL QKMQVENPLF YYAVRINESD NMSGFFWADA KSMMDYIYFG  240
DVVCFDTTYK TSDYGRPLIL FLGVNHHKQL VLFGTALLYD GSRESYAWLF ETFKTVMRGK  300
QPKAFLSDRS EEISDVIAEV WPGAAQRLCV WHLFQNATMQ LSQVFEGSKT FASEFSRCIF  360
ECEEVEEFVS AWESLIEKYD LKDNEWLVKQ FEERERWGLP FGRDVFCADF SSTLVKENWN  420
TFLKKGLGQN VDMLQFLEHY DKVVEERRNA EMRADFNACQ SLPRIPSFRM LKQAASAYTP  480
AIFKVFEKEF ELHMDCMVYS CGEIGATSDY KVIVEEKPKP HFVRYDSVTG TLLCSCKKFE  540
FAGIQCRHVF KVLDFRNIKE LPSQYILKRW RKDAKIGTIR HDSGYIMEND PKSSFARRYN  600
YLCYILSSIA ARAAKTTESS NFIESQMNLL SEQVEQLLHS RPFQIPYLIS ATSNEQRDVL  660
ESLADSLQHD SNAEAGFVGG ATNGNLIFKV ILALFQAKSM GPFMITISMQ SDMPDSIWVI  720
LE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1 family protein

Link Out ? help Back to Top
Ensembl	Dr04761.1