PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04727.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family ARF
Protein Properties Length: 924aa    MW: 102722 Da    PI: 6.4785
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04727.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.1e-24127228199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  Dr04727.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNENNQLL 222
                99*****************************8544444..48************************************************..7888889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  Dr04727.1 223 LGIRRA 228
                ***997 PP
2Auxin_resp119.13.5e-39253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+ eFvv+++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
   Dr04727.1 253 AAHAAATNSRFTIFYNPRASPCEFVVPLAKYVKAVYhIRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                 79*********************************988*******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 924 aa     Download sequence    
MRLSSSGLAP QNQEGEQRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNRE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVES DEVYAQMTLQ PLSAQEQKDP YLAAELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNENNQ LLLGIRRANR PQTVLPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPCEFVVPL AKYVKAVYHI RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT  360
TFPMYPSPFS LRLKRPWPPG LPSLHGMRDD DIGLNNPFMW LRDGDRGMQS LNFQGLGVSP  420
WVQPRIDASM LGLQPDMYQA MAAAALQEIR TVDPLKQPGP AMLQFQPQNM TNRSTPLLPS  480
QMFQQMQSQP QHSLLQAVQE SSGQSQTQSQ LLQRQLQHCH SFNDQQQPQP QVQLSPRHQH  540
QHQQQQHQHQ QVQLQPQQHQ QMQHHQMADQ QIPNVMPTLS HIASSSQSQS PTFQSMSSFC  600
QKQNFPEINA NPVPTSGVSP LHSILRSFPA EETSNLLGLP RASSLLNSNG WSSKRLAVEA  660
TLPAGAQCVS SQVEQLGLPQ PNVSQNSGSL PPFPGRDCLV EQECSTDPQS HQLFGVNIDS  720
SSLLVQNGLS NLRSVGSETD STSLPYATAN FLNTTGSDFP FNQALTSTGC LEESGFLPSP  780
DNVDQVDAQN GTFVKIYKSG SFGRSLDITK FSSYPELRSE LGRLFGLEGQ LDDPLRSGWQ  840
LVFVDRENDV LLVGDDPWHE FVNNVWCIKI LSPQEVQQMG KQGVDLLNST PVRRLSSSSC  900
DEYVSLQDSR NLSTGITSVG SLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein