PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04399.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

ARR-B

Protein Properties

Length: 688aa MW: 75400.6 Da PI: 5.7488

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04399.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.2	6.7e-27	222	275	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++F++av+qL +e+A+Pk+ile+mkv+gLt+e+v+SHLQkYRl Dr04399.1 222 KPRVVWSVELHRQFIDAVKQL-TTERAVPKKILEIMKVPGLTRENVASHLQKYRL 275 79*****************.9*****************************8 PP
2	Myb_DNA-binding	38.5	2.7e-12	224	274	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ +++davkql ++ +k+I + m g+t++++ s++qky+ Dr04399.1 224 RVVWSVELHRQFIDAVKQLTTEraVPKKILEIMKvPGLTRENVASHLQKYR 274 678***********************************************7 PP
3	Response_reg	79.3	1.3e-26	46	150	1	105
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+pl +++++++l++ +y +v++++ + al ll+e++ +Dl+l D+ mp+mdG++ll+ i e +lp+i+++a ++++ + + + Ga Dr04399.1 46 VLVVDDDPLCLKIVEKILRNCQY-DVTTCSRAAVALSLLRERRgsFDLVLSDVYMPDMDGFKLLELIGLEM-DLPVIMMSADDSKDVVMKGITHGAV 140 89*******************.***********999999******************6644.8******************** PP EEEESS--HH CS Response_reg 96 dflsKpfdpe 105 d++ Kp ++e Dr04399.1 141 DYIIKPLKME 150 ****9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MNAVLLLGMD SIGQSATNSP TPLSNYDAGS TSSSSAFRKF PAGLRVLVVD DDPLCLKIVE 60 KILRNCQYDV TTCSRAAVAL SLLRERRGSF DLVLSDVYMP DMDGFKLLEL IGLEMDLPVI 120 MMSADDSKDV VMKGITHGAV DYIIKPLKME VGQNLWQHVA RKNMCNDAGL KQTVSVEEND 180 RQKKVSDDGD NALPLSGNVK RRKDEKEGEN EQREDSSSSV KKPRVVWSVE LHRQFIDAVK 240 QLTTERAVPK KILEIMKVPG LTRENVASHL QKYRLYLKKT NPEALAQGVS DVTYGPIDAV 300 NGFSHPHENH MNMNIGTRRG TGSGIGMPVV DRLNYISSAP QISNSTRMIS GQHWSSPXPM 360 NLNXGASFNM ESRQPQPPVL QAWGSLSHQI GNNSTNLLNP XASFCANTSF SAGSLSGQTR 420 NSMIMQMPQQ GQHLPXSRQQ SSLNIDAPRQ AQLSSQLLNG ITGEHDCFNQ QVLFNDICLY 480 GEAALTGTML PGSYGLAPQT LYSDLQNNYS NASVGNSYPL GMGTTNLNST RMFQECVTSS 540 GLLDWIKPGL KGVKDANHIE DWKFQSTYSS SELPQHPNIN FGSSISASTD LMASVKDGNT 600 CAVSKGAYKI RSQLGKVESV AQRNNTLLFD NAXLPSDDIS DLSCQDDLFG NIHIENEEFL 660 DMISQQELAG HLESDLDISN YALGGNLQ

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MNAVLLLGMD SIGQSATNSP TPLSNYDAGS TSSSSAFRKF PAGLRVLVVD DDPLCLKIVE  60
KILRNCQYDV TTCSRAAVAL SLLRERRGSF DLVLSDVYMP DMDGFKLLEL IGLEMDLPVI  120
MMSADDSKDV VMKGITHGAV DYIIKPLKME VGQNLWQHVA RKNMCNDAGL KQTVSVEEND  180
RQKKVSDDGD NALPLSGNVK RRKDEKEGEN EQREDSSSSV KKPRVVWSVE LHRQFIDAVK  240
QLTTERAVPK KILEIMKVPG LTRENVASHL QKYRLYLKKT NPEALAQGVS DVTYGPIDAV  300
NGFSHPHENH MNMNIGTRRG TGSGIGMPVV DRLNYISSAP QISNSTRMIS GQHWSSPXPM  360
NLNXGASFNM ESRQPQPPVL QAWGSLSHQI GNNSTNLLNP XASFCANTSF SAGSLSGQTR  420
NSMIMQMPQQ GQHLPXSRQQ SSLNIDAPRQ AQLSSQLLNG ITGEHDCFNQ QVLFNDICLY  480
GEAALTGTML PGSYGLAPQT LYSDLQNNYS NASVGNSYPL GMGTTNLNST RMFQECVTSS  540
GLLDWIKPGL KGVKDANHIE DWKFQSTYSS SELPQHPNIN FGSSISASTD LMASVKDGNT  600
CAVSKGAYKI RSQLGKVESV AQRNNTLLFD NAXLPSDDIS DLSCQDDLFG NIHIENEEFL  660
DMISQQELAG HLESDLDISN YALGGNLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	1e-100	ARR-B family protein

Link Out ? help Back to Top
Ensembl	Dr04399.1