PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04239.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Protein Properties

Length: 1097aa MW: 122155 Da PI: 8.3817

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04239.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.3	2.5e-17	869	944	17	98
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++p +f+++++ +++sk +tl+ +sgr W+ +l k+s++++l +GW eF++++ L+e +f+vF++dg +f+++vk+f Dr04239.1 869 RIPVEFLKHIS--TATSKRVTLKGPSGRCWNAEL--GKSSKGTFLCGGWAEFAEDHALREYEFLVFQYDG--DFTFTVKIFG 944 79***7776..568899***********..****************************987..777899996 PP

Sequence ? help Back to Top
Protein Sequence Length: 1097 aa Download sequence
MRFLCNSREN YSDSHAEPRN ARPPRGGSRG SFSGKHRRTS RPQTSHPLPP YRNLSSQHIL 60 APQNSQFPKN SPVREGTTYA DATRSLPLEP LATSHPSPLK RRRSPDSAER CSKCLRTGHR 120 ADECRHQLTX KRCSGAGHIA IRCPLXSPPL RPDSKKPRIR SKNFSLETSH SNPKPRSSTS 180 ELKPLLHIPA RPNKTSLRVS LPITEAILKS KEDLKKMVII RVLSGNASVR SLHDSLPQCL 240 NTDLCEHITP FNNDFILTLS SSKDAATAVK RSPITLITTH GPCCITLSHW TAEFGSHAVA 300 AGNYNWIRIT NLPLHCWNWD SIVDILKPIG DLIYVQKKEX VTLEHLRTLV RLKSSISFPL 360 EITVDVGVRS FIVKLEDDGV HTLRSKLVQG PTSHPPAHLR SAQPSSNPTY VPKSDKGKAP 420 LVQPPVDIPT GKAVEHCSSL GLSTGSTVXG XQGGSLXPSG DRXIAGTPEL PSASRECAGG 480 QLALSPCSGD VMEVPSTAVH LPRDDLPSIR FGTLPSSSLP RDQAPRDSCT PRDCVSDSPE 540 KLRDDIPSDR PALRNQHSDQ NPTLQSDEMP RDXSSLDHNS LTSLKLSLPR DKSTPDLLSD 600 TDLSFQNKQH SKSLNNLSDK APLPSDFHTS QPYPDCGQGP SLESAXQGIT PSHLQDNPPI 660 IPIPEGYKWI FFYGGWTLVP CINSEKFYDL DPIPQISPED XXSDEELLDW GEDETFLDQD 720 MADPDFLPED NCIXQEDHIS SHFDSAPVIP ELPKDFSKHX HXSPKXLRRS ERPKKXSGRW 780 NEDAGFVPHP PRSSKKKTPE DPREAHGSAG GIIIAWNSSL LVADRHQQPL XEASQKIKRS 840 LDFFSARAST SAGDLDRNAP QDYLFYLQRI PVEFLKHIST ATSKRVTLKG PSGRCWNAEL 900 GKSSKGTFLC GGWAEFAEDH ALREYEFLVF QYDGDFTFTV KIFGVNACER QDLFTVSHRK 960 RRKLCEVKDR YVESSLDVGC VLLSSQVIKK EVQSDDVSVL GPDADRGKYL RGRNCLKRSE 1020 TMDDVKIKSE CDELPIEIIS SPKKVYKRSC SRKRQLVIHE ERSQAQEAAN SFTSKFPFTT 1080 VKLCRSHITQ PYVMVRC

Sequence ? help Back to Top

Protein Sequence Length: 1097 aa Download sequence

MRFLCNSREN YSDSHAEPRN ARPPRGGSRG SFSGKHRRTS RPQTSHPLPP YRNLSSQHIL  60
APQNSQFPKN SPVREGTTYA DATRSLPLEP LATSHPSPLK RRRSPDSAER CSKCLRTGHR  120
ADECRHQLTX KRCSGAGHIA IRCPLXSPPL RPDSKKPRIR SKNFSLETSH SNPKPRSSTS  180
ELKPLLHIPA RPNKTSLRVS LPITEAILKS KEDLKKMVII RVLSGNASVR SLHDSLPQCL  240
NTDLCEHITP FNNDFILTLS SSKDAATAVK RSPITLITTH GPCCITLSHW TAEFGSHAVA  300
AGNYNWIRIT NLPLHCWNWD SIVDILKPIG DLIYVQKKEX VTLEHLRTLV RLKSSISFPL  360
EITVDVGVRS FIVKLEDDGV HTLRSKLVQG PTSHPPAHLR SAQPSSNPTY VPKSDKGKAP  420
LVQPPVDIPT GKAVEHCSSL GLSTGSTVXG XQGGSLXPSG DRXIAGTPEL PSASRECAGG  480
QLALSPCSGD VMEVPSTAVH LPRDDLPSIR FGTLPSSSLP RDQAPRDSCT PRDCVSDSPE  540
KLRDDIPSDR PALRNQHSDQ NPTLQSDEMP RDXSSLDHNS LTSLKLSLPR DKSTPDLLSD  600
TDLSFQNKQH SKSLNNLSDK APLPSDFHTS QPYPDCGQGP SLESAXQGIT PSHLQDNPPI  660
IPIPEGYKWI FFYGGWTLVP CINSEKFYDL DPIPQISPED XXSDEELLDW GEDETFLDQD  720
MADPDFLPED NCIXQEDHIS SHFDSAPVIP ELPKDFSKHX HXSPKXLRRS ERPKKXSGRW  780
NEDAGFVPHP PRSSKKKTPE DPREAHGSAG GIIIAWNSSL LVADRHQQPL XEASQKIKRS  840
LDFFSARAST SAGDLDRNAP QDYLFYLQRI PVEFLKHIST ATSKRVTLKG PSGRCWNAEL  900
GKSSKGTFLC GGWAEFAEDH ALREYEFLVF QYDGDFTFTV KIFGVNACER QDLFTVSHRK  960
RRKLCEVKDR YVESSLDVGC VLLSSQVIKK EVQSDDVSVL GPDADRGKYL RGRNCLKRSE  1020
TMDDVKIKSE CDELPIEIIS SPKKVYKRSC SRKRQLVIHE ERSQAQEAAN SFTSKFPFTT  1080
VKLCRSHITQ PYVMVRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	8e-13	B3 family protein

Link Out ? help Back to Top
Ensembl	Dr04239.1