PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04027.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C3H
Protein Properties Length: 294aa    MW: 31176.2 Da    PI: 9.9772
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04027.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-11176202127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykte Cr + +tG C+y ++C+FaHg+
  Dr04027.1 176 YKTEMCRLWVETGVCRYRSKCQFAHGK 202
                9************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MDIYYGMSSG TTTSSDHTVS SGGSGSWTSQ SPNRRRRFPS PSPNAFLGPA FNACASSPKS  60
PATHLDLDPA LLRYTRSRLP DSSDSPMSRL KLLPHHLLQL RSPRGGTSPL SSIGNLVAGA  120
SSAVYKTPVK MEVEEDVLVM DGVLVGENSG SGRARGGGEL GSSSSSSSSG GVGSLYKTEM  180
CRLWVETGVC RYRSKCQFAH GKEELRGARS VKPKTEGSKH AQATAGSKGR YIPPPIAAAL  240
ALAAKASTTP TVPPREPPSF VWPPTEEEEA VINRVLYGSS QKRRLPVFLE ICPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-07C3H family protein