PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03610.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 1327aa MW: 149286 Da PI: 8.2806

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03610.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.5e-06	965	985	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C++fa+ +C yG++CkF+H Dr03610.1 965 APCKYFAE-AQCYYGEKCKFSH 985 79****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 1327 aa Download sequence
MTPKKCMPKC DLMTENYVSS DFNQEIVSSV KLVDSHQEKE SKSDGHSKGR DSTECSDIKA 60 GSQPASKCSI RNSIPGKQTA VHETDNKVPT ESAAQGQSDN DSWAVALAQY DEQVRNKSVL 120 DAWHRHSTXV SAKPCWSTSQ RLSHDSQYGP KSQDDEYRSR RGLTRDLSDF SGSQDDSKIS 180 NWEKATGLQT ARRSSSTNIE SNRWDSWVVA CDQTDKCDTM NTKKHTPSRC LMDEKHALPA 240 SQEIVSSVKR GDPYQEKEPK SDYHSKCTKR ARCSVIKTGH QPVSKCSIQD GIHGNRTAMH 300 KTDNKXHTND LSGAHHRNDN DGWPAAHDQS NKDSWAAALD QQDEQARNSS VLDGWQRHSP 360 AISMKHDQGM SNRGYHHGPS HGSQFENETC DERYQSRGKL AAHLSDSAGS KDGSNSKSSN 420 WDKATGLQSA SRSFSSNKVT NGWDPWVAAH DQTNRWDRKN SMNQNPTFVV MNEKHAPAVS 480 QEILSLEKHD ESYHEKAPKS DQSSKFAETD NKEKTDNWSA ALEQHDAWVS NTSHGGWNRH 540 STVSTKYSRS TTDRSRSHSP SHGSRYGSET RDDRSRKGFS TCIRDVSGSK DCSESSNWEK 600 AIGSQTVNRR FSPKKESNTW DPWVAACNQT NRKRKSMSSG CELWGEHSCD IKPRHGSSQS 660 GSRRWNISNT IKHGPRSADN SGQTRAGEFP IACTGISCNK DDSRGSNLNX VSGDLIANRV 720 GMSKTSTGRW GAAPDRANKS MPPDLHTWRR RGRSISPQVG WNKLERSPTP LSVTKSGSES 780 WNRRDRTGAG SSARGYSDRE DGAWRKSDND MREIRGNRPE RRRHLSHHSR ERFTYSIGXS 840 DRSRDGHCHW DVPHHGSRAX FTYSIEQRDH SRDRHCNWDV SHSDSDWEWH ESHLNNKPTS 900 SSHGFDRERH HGGALTSYDL RDVHEDAPSH GPLSMREEFG QRSHERRNVD STLKQRLGPR 960 QVGGAPCKYF AEAQCYYGEK CKFSHQLELG YPKDRRHDDV YACQKDTRST SSLNRQKRGD 1020 GTSTIDLPNS ACWMDVDNDA RFRAPLSTDG YLLRKTEHAQ SHILKPERSE RDIQQSMDPN 1080 NGLSQQHVHS VVPNWFHEHS SPWHPLNTNG FPSDARSHQI LKNGDAYSLP GDSAQPYSVP 1140 SVSQAVETSE WIACVPSSST TSAMVSKQPS QLYTGSTWID STATPPVPPG FSPVDQGVQE 1200 QHHNMDNLKD YGTHTEALNP YLQTNEWTKD ENVMMMLKFE LVDLVKELLR PAWKNGNLSR 1260 ETHKTIVKKV VDKVISSING PDIPQTKEMA DIYLLESKSN ISKLVQFRVH SFEHKHSAED 1320 VRGGSAI

Sequence ? help Back to Top

Protein Sequence Length: 1327 aa Download sequence

MTPKKCMPKC DLMTENYVSS DFNQEIVSSV KLVDSHQEKE SKSDGHSKGR DSTECSDIKA  60
GSQPASKCSI RNSIPGKQTA VHETDNKVPT ESAAQGQSDN DSWAVALAQY DEQVRNKSVL  120
DAWHRHSTXV SAKPCWSTSQ RLSHDSQYGP KSQDDEYRSR RGLTRDLSDF SGSQDDSKIS  180
NWEKATGLQT ARRSSSTNIE SNRWDSWVVA CDQTDKCDTM NTKKHTPSRC LMDEKHALPA  240
SQEIVSSVKR GDPYQEKEPK SDYHSKCTKR ARCSVIKTGH QPVSKCSIQD GIHGNRTAMH  300
KTDNKXHTND LSGAHHRNDN DGWPAAHDQS NKDSWAAALD QQDEQARNSS VLDGWQRHSP  360
AISMKHDQGM SNRGYHHGPS HGSQFENETC DERYQSRGKL AAHLSDSAGS KDGSNSKSSN  420
WDKATGLQSA SRSFSSNKVT NGWDPWVAAH DQTNRWDRKN SMNQNPTFVV MNEKHAPAVS  480
QEILSLEKHD ESYHEKAPKS DQSSKFAETD NKEKTDNWSA ALEQHDAWVS NTSHGGWNRH  540
STVSTKYSRS TTDRSRSHSP SHGSRYGSET RDDRSRKGFS TCIRDVSGSK DCSESSNWEK  600
AIGSQTVNRR FSPKKESNTW DPWVAACNQT NRKRKSMSSG CELWGEHSCD IKPRHGSSQS  660
GSRRWNISNT IKHGPRSADN SGQTRAGEFP IACTGISCNK DDSRGSNLNX VSGDLIANRV  720
GMSKTSTGRW GAAPDRANKS MPPDLHTWRR RGRSISPQVG WNKLERSPTP LSVTKSGSES  780
WNRRDRTGAG SSARGYSDRE DGAWRKSDND MREIRGNRPE RRRHLSHHSR ERFTYSIGXS  840
DRSRDGHCHW DVPHHGSRAX FTYSIEQRDH SRDRHCNWDV SHSDSDWEWH ESHLNNKPTS  900
SSHGFDRERH HGGALTSYDL RDVHEDAPSH GPLSMREEFG QRSHERRNVD STLKQRLGPR  960
QVGGAPCKYF AEAQCYYGEK CKFSHQLELG YPKDRRHDDV YACQKDTRST SSLNRQKRGD  1020
GTSTIDLPNS ACWMDVDNDA RFRAPLSTDG YLLRKTEHAQ SHILKPERSE RDIQQSMDPN  1080
NGLSQQHVHS VVPNWFHEHS SPWHPLNTNG FPSDARSHQI LKNGDAYSLP GDSAQPYSVP  1140
SVSQAVETSE WIACVPSSST TSAMVSKQPS QLYTGSTWID STATPPVPPG FSPVDQGVQE  1200
QHHNMDNLKD YGTHTEALNP YLQTNEWTKD ENVMMMLKFE LVDLVKELLR PAWKNGNLSR  1260
ETHKTIVKKV VDKVISSING PDIPQTKEMA DIYLLESKSN ISKLVQFRVH SFEHKHSAED  1320
VRGGSAI

Link Out ? help Back to Top
Ensembl	Dr03610.1