PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03473.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

FAR1

Protein Properties

Length: 463aa MW: 52679.5 Da PI: 5.5706

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03473.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.3	3.4e-25	88	175	2	89
FAR1 2 fYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA+++GF r+ +s++sk ++ ++++fvCskeg +++ +++ +++r+r + r gCka+++v ++ +++w+vtkle+ HnH+l Dr03473.1 88 FYNDYARRLGFPFRVGRSRRSKGvQEVLIMKRFVCSKEGVYRKKPTNEGTRKRERISMREGCKAMMEVIRD-SNRWVVTKLEKAHNHHL 175 *******************761556799**********99999***************999.9************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MFMEGARAEG DELIADYVEC LMSLDTNTRP GETDQQVIGN SGQESTSISA QTIEHTEAKD 60 LVTAIVGDVK QEPYLGMEFD SDEAAKTFYN DYARRLGFPF RVGRSRRSKG VQEVLIMKRF 120 VCSKEGVYRK KPTNEGTRKR ERISMREGCK AMMEVIRDSN RWVVTKLEKA HNHHLGTCSR 180 VEMSPTQKLE TMNEFYKKYF NTKTSLKVFL TQFDLSMENR YDEELQADSF TLCTKPLLKT 240 ASPIEKQAAE TYTRMVFEKF QEEFVESLGY SVYKIKDGTI SKFTVARDED ALESFIVTYD 300 TAKGTASCSC KHFEFSGILC RHVLGVFLMV DLHMLPEEYF LKRWTRNAKS DVLLDDCSDE 360 LQSNCHESII SRYNDLCHDA IKCAEKGTSS VEIYKAAKDA LQKAFAEIAI VEKSAGKGEQ 420 RDAININEXI TVDEAMTNQS LQDPERKVTN LLGHLLGSTW SPM

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MFMEGARAEG DELIADYVEC LMSLDTNTRP GETDQQVIGN SGQESTSISA QTIEHTEAKD  60
LVTAIVGDVK QEPYLGMEFD SDEAAKTFYN DYARRLGFPF RVGRSRRSKG VQEVLIMKRF  120
VCSKEGVYRK KPTNEGTRKR ERISMREGCK AMMEVIRDSN RWVVTKLEKA HNHHLGTCSR  180
VEMSPTQKLE TMNEFYKKYF NTKTSLKVFL TQFDLSMENR YDEELQADSF TLCTKPLLKT  240
ASPIEKQAAE TYTRMVFEKF QEEFVESLGY SVYKIKDGTI SKFTVARDED ALESFIVTYD  300
TAKGTASCSC KHFEFSGILC RHVLGVFLMV DLHMLPEEYF LKRWTRNAKS DVLLDDCSDE  360
LQSNCHESII SRYNDLCHDA IKCAEKGTSS VEIYKAAKDA LQKAFAEIAI VEKSAGKGEQ  420
RDAININEXI TVDEAMTNQS LQDPERKVTN LLGHLLGSTW SPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-55	FAR1 family protein

Link Out ? help Back to Top
Ensembl	Dr03473.1