PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03436.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CPP

Protein Properties

Length: 805aa MW: 88037 Da PI: 5.9062

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03436.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.9	6.4e-16	487	524	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C+e C+C++C+Nk Dr03436.1 487 CKRCNCKKSKCLKLYCECFAAGVFCAEPCSCQSCFNKP 524 89**********************************96 PP
2	TCR	50.6	3.7e-16	571	609	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Dr03436.1 571 RHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNA 609 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence
MNTPERSKVG TPTSKVEDSP VFSFINSLSP IQPVKSTHSA QAYHTLSFAS ISSVFTSPHA 60 NLQREARIPI RDSVSDLPKH ETSSDNGAGN NHCVGPSNVV KPSISAGTRS LSEXAVDNSV 120 ECSNSSCDLP QPLPYDCHSP HHNATPCHVI KSVLKSVLDN TPDELVEYDE DCLGKTEILF 180 STETELQDEQ TEAKVVDHNW DDLISNDADN LMIFDSSTEL EACEVPGEKF HHDDEDVKPF 240 IPSYIQMNVV GLKKTDPDAS LVPDICEAKN VPRVEQTEGV RDQDETGHRC RVFSENCENQ 300 AFIKDRNQEM GHGSTSGISI ACKIESQLQR GMRRRCLNFE GVPEMGLQND STASHSNGAH 360 PTSNILPVPF KAGNPSTCIV PGIGLHLNTL GLKDRFLSRE TLVSGQRLIS MPSPICPFHS 420 TTGLEPHDKS LSVDKDLVTG SGIHNLSIMH DDVSQSSALI SGKDLHQSSP KKKRRKLEIG 480 AENREGCKRC NCKKSKCLKL YCECFAAGVF CAEPCSCQSC FNKPIHQETV LNTRKQIESR 540 NPLAFAPKVI RPSDPDQEIG EELNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSVS 600 CRCEGCKNAF GRKDGSLPIE DEEFEQEEEQ KDANLNVSDG LDAGEQSADP TNDELQYPES 660 VLQLTPFQVI RPSMDLAILS SGQTPLSSSL TTVTSASFNS FATLRRFEMP LSQCKLGKLA 720 RVDSEDETPA ILKGNVSPIN SVKATSPNQK RVSPPQFGTR LSPNHKGGRK LILKSIPSFP 780 SLNNDLSHEI SANYXDSSLD MPSQS

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence

MNTPERSKVG TPTSKVEDSP VFSFINSLSP IQPVKSTHSA QAYHTLSFAS ISSVFTSPHA  60
NLQREARIPI RDSVSDLPKH ETSSDNGAGN NHCVGPSNVV KPSISAGTRS LSEXAVDNSV  120
ECSNSSCDLP QPLPYDCHSP HHNATPCHVI KSVLKSVLDN TPDELVEYDE DCLGKTEILF  180
STETELQDEQ TEAKVVDHNW DDLISNDADN LMIFDSSTEL EACEVPGEKF HHDDEDVKPF  240
IPSYIQMNVV GLKKTDPDAS LVPDICEAKN VPRVEQTEGV RDQDETGHRC RVFSENCENQ  300
AFIKDRNQEM GHGSTSGISI ACKIESQLQR GMRRRCLNFE GVPEMGLQND STASHSNGAH  360
PTSNILPVPF KAGNPSTCIV PGIGLHLNTL GLKDRFLSRE TLVSGQRLIS MPSPICPFHS  420
TTGLEPHDKS LSVDKDLVTG SGIHNLSIMH DDVSQSSALI SGKDLHQSSP KKKRRKLEIG  480
AENREGCKRC NCKKSKCLKL YCECFAAGVF CAEPCSCQSC FNKPIHQETV LNTRKQIESR  540
NPLAFAPKVI RPSDPDQEIG EELNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSVS  600
CRCEGCKNAF GRKDGSLPIE DEEFEQEEEQ KDANLNVSDG LDAGEQSADP TNDELQYPES  660
VLQLTPFQVI RPSMDLAILS SGQTPLSSSL TTVTSASFNS FATLRRFEMP LSQCKLGKLA  720
RVDSEDETPA ILKGNVSPIN SVKATSPNQK RVSPPQFGTR LSPNHKGGRK LILKSIPSFP  780
SLNNDLSHEI SANYXDSSLD MPSQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	470	476	PKKKRRK
2	470	477	PKKKRRKL
3	471	475	KKKRR
4	471	476	KKKRRK
5	472	476	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-104	CPP family protein

Link Out ? help Back to Top
Ensembl	Dr03436.1