PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02907.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 844aa MW: 94492.4 Da PI: 6.8728

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02907.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.3e-08	138	180	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ + + q++++++ + Dr02907.1 138 AWTRQEEENFFNALRQVGKN-FEKITCRVQ-SKNRDQVRHYYYRL 180 6***************99.*****.9********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence
MVSNNRSASA MQIFQYALRR GSSLEAEFTT VRVALQLPQN LLVSITDLFD NLKRGCHEFL 60 RLKSLSDKTS AVIVGRCDLF HRLIRSNPLG IQILMALEVQ SPSKDNELLK DGDCLHSPSL 120 IDTDSAKPAK RQTRQWAAWT RQEEENFFNA LRQVGKNFEK ITCRVQSKNR DQVRHYYYRL 180 VRRINKLLAP GFSLDAKNSK DTIAAMLRWW SLLEKFSCSA SKLHLKPRRF KIFIEALENQ 240 LLKDRNKTRK RHPSQGENSS SAPSTMFLSK AAETDAHPVK LIDVDTQNAP KIKATKGASW 300 RRSGAAITFN KEDLSTQKIV RQKRRTGMGV SAACKRWEKA AMAGISLVAD AAEQLEHTSN 360 GRDHQQTFNM HCPGKKNINV SVDITHPPPP FLLGETCSHQ IRKTLVHPSG KLKLQLFPID 420 EYTRRALEKD SQNPHLELTL SARKRISSVL EHLNRKWGNS SIAYGELVLF PYIIQQRDIA 480 SCQKWTIEDT DASAADVYAT IGSPTIFRLR YGWFPVAAHS SETIPITCDV PHLDKSIQTR 540 ANHEGYARTE RREGLPDSCG QTPCIFEKED RDDDIIEQRT RNDATFSAGQ WADSLMSVGD 600 LLSEASKAAN FGSTYAAPNP EQMQSSYDSF DAAIAAQIAG QQSPGSPTRL PQSIWHAEET 660 CDGFSFRSFP DAKREDSNPL ISSSNFVLRE NTCTHSLAFE DYLKDLVESS PLDEPSSKYL 720 KVASAAAEEI PSDAELNELV SESAEDILPD IEKQNKIDKD PCLSDVFWPD SLGPLDLEMP 780 SSRYQGHDMI IDESISLGGL NRLIASSLDA FQNCSFFSVD RKDIPASEFQ GASALLDSTP 840 TSEE

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence

MVSNNRSASA MQIFQYALRR GSSLEAEFTT VRVALQLPQN LLVSITDLFD NLKRGCHEFL  60
RLKSLSDKTS AVIVGRCDLF HRLIRSNPLG IQILMALEVQ SPSKDNELLK DGDCLHSPSL  120
IDTDSAKPAK RQTRQWAAWT RQEEENFFNA LRQVGKNFEK ITCRVQSKNR DQVRHYYYRL  180
VRRINKLLAP GFSLDAKNSK DTIAAMLRWW SLLEKFSCSA SKLHLKPRRF KIFIEALENQ  240
LLKDRNKTRK RHPSQGENSS SAPSTMFLSK AAETDAHPVK LIDVDTQNAP KIKATKGASW  300
RRSGAAITFN KEDLSTQKIV RQKRRTGMGV SAACKRWEKA AMAGISLVAD AAEQLEHTSN  360
GRDHQQTFNM HCPGKKNINV SVDITHPPPP FLLGETCSHQ IRKTLVHPSG KLKLQLFPID  420
EYTRRALEKD SQNPHLELTL SARKRISSVL EHLNRKWGNS SIAYGELVLF PYIIQQRDIA  480
SCQKWTIEDT DASAADVYAT IGSPTIFRLR YGWFPVAAHS SETIPITCDV PHLDKSIQTR  540
ANHEGYARTE RREGLPDSCG QTPCIFEKED RDDDIIEQRT RNDATFSAGQ WADSLMSVGD  600
LLSEASKAAN FGSTYAAPNP EQMQSSYDSF DAAIAAQIAG QQSPGSPTRL PQSIWHAEET  660
CDGFSFRSFP DAKREDSNPL ISSSNFVLRE NTCTHSLAFE DYLKDLVESS PLDEPSSKYL  720
KVASAAAEEI PSDAELNELV SESAEDILPD IEKQNKIDKD PCLSDVFWPD SLGPLDLEMP  780
SSRYQGHDMI IDESISLGGL NRLIASSLDA FQNCSFFSVD RKDIPASEFQ GASALLDSTP  840
TSEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.2	1e-163	MYB_related family protein

Link Out ? help Back to Top
Ensembl	Dr02907.1