PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02606.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 301aa MW: 33568 Da PI: 8.1901

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02606.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl Dr02606.1 14 KGPWSPEEDSKLKEFIEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	39	1.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Dr02606.1 69 GEFSPDEDRIICTLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDSKLKEFIE KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSPDEDRIIC TLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGF 120 TPSKRKQLQL QQQHQQQHQQ QQIYQPCFEI STSTISSTYG GKEAAQQVLS LDHAVQXQYQ 180 MKSSTGSSIL MFGGETSCSS SDGSCTQISY DYNSMGNNIN GGEPIGFEQQ CFYDEKMMVG 240 IVGGGGGGGP XDYGYEEIRE LLLNGQNGCN DNMCFATAAG TEGTNRGTXN YKIQEKVMYY 300 H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr02606.1