PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02242.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LSD

Protein Properties

Length: 1345aa MW: 149252 Da PI: 6.3222

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02242.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.7	4.6e-14	1291	1315	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+ V Dr02242.1 1291 CGQCRTTLMYPSGAPSVKCAVCHYV 1315 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1345 aa Download sequence
MESVENDDSH IGYGYMLQSV IGDSSNKFLI AKLQLINSTP IYGPDXNNLE FFACFETKDR 60 LRVRITDSDH RRWEIPPEII PREAPNVVLR SPKETLLLSS GDSDLILTLR RSSPFTFFIS 120 RRSTGDVLFD TAVPSITSGI VFKDQYLELS SSLPGDRSSI YGLGEHTKET FRLIHNDTFT 180 LWNADIGSAN LDLNLYGSHP FYMDLRSSPP GTTHGVLLLN SNGMDINYAG SHITYKVIGG 240 VLDFYFFAGP SPLLVMEQYT DLIGRPAPMP YWSFGFHQCH FGYKNVSDLE SVVAGYAKAG 300 IPLEVMWTDS DYMDASKDFT LDPVNFPQEN MTKFVNQLHE NRQRYVMIID PGININKNYS 360 TFLRGLKADI FLKRNEVNYR GSVXPGDVYF PDFWNPKAST FWSEEIEIFR KTIPVDGLWI 420 DMNEISNFID PLPQNQLDDP PYKINNAGVQ RPLSNKTVPA SSIHYGNFTE YDVHNLYGFL 480 ESKATHDALV KDTGKRAFVL SRSTFVGSGK YAAHWTGDNA ATWNDLAYSI PTMLSFGLFG 540 IPMVGADICG FSRGTNEELC RRWIQLGAFY PFARDHSDKY STRQELYLWD SVARSARKAL 600 GLRYRLLPYF YTLMYEAHSX GXPIARPLFF SFPXDXXTYX ISTQFLIGEG VMVSPVLSPG 660 XVSVNAYFPK GXWFNLFNYS XVVXASXGRY VPLDAPEDTI NVHVKGGHVL VMQEAGMSTM 720 AGSQSGFQLL VALDDNGKAE GKVFVDDGEV VEMGGEDLSQ WSLVRFSAGV EGGDLKLKSK 780 VINGIYASDK KISVKNVVVL GLKNESAVNG GLNSISGVNV TDNCVGFGVA EIDGLSLMLG 840 EPFELKVTMA ALNCRFSLEX WAQICRVLQL PSLPSLMSLM WGVXRNALRA GSRVVGDGAI 900 KAFVWAIWLT RNDVIFSDKC VCPHDVVVKT DHFILSWFSA ASEGLRSTLE DSISSIRRSL 960 EFTGPQSEGP RAAHTTEEAM DMILAFLASF FWSDSLVIVN LIRGNIADAL RESKREMSIA 1020 TRGVEREIAA LQLEAATRIL ARQLVRLRQQ ITNLQGTRAQ IRGVATHTQA MYASTSISTG 1080 MKGASKAMKA MNKQMEPAKQ AKVIREFQKQ SSQMDMTIEM MSESIDETLD KDEAEEETEE 1140 LTNQVLDEIG VGVASQLSSA PKGRIATTRK VESVSRNTAP ETPGVDDLEK RQPRNRSFVS 1200 SSSERNPVST LPLLLAPSPS PLRIEESAVC RXNLCATAVG VFFFIRGELR INGDVPAILR 1260 RLPNTVDVRS WCYQRFSLFS RGGSPVAHVN CGQCRTTLMY PSGAPSVKCA VCHYVTNVGM 1320 NTARVPIPVN RPNGLTTMPP STSAV

Sequence ? help Back to Top

Protein Sequence Length: 1345 aa Download sequence

MESVENDDSH IGYGYMLQSV IGDSSNKFLI AKLQLINSTP IYGPDXNNLE FFACFETKDR  60
LRVRITDSDH RRWEIPPEII PREAPNVVLR SPKETLLLSS GDSDLILTLR RSSPFTFFIS  120
RRSTGDVLFD TAVPSITSGI VFKDQYLELS SSLPGDRSSI YGLGEHTKET FRLIHNDTFT  180
LWNADIGSAN LDLNLYGSHP FYMDLRSSPP GTTHGVLLLN SNGMDINYAG SHITYKVIGG  240
VLDFYFFAGP SPLLVMEQYT DLIGRPAPMP YWSFGFHQCH FGYKNVSDLE SVVAGYAKAG  300
IPLEVMWTDS DYMDASKDFT LDPVNFPQEN MTKFVNQLHE NRQRYVMIID PGININKNYS  360
TFLRGLKADI FLKRNEVNYR GSVXPGDVYF PDFWNPKAST FWSEEIEIFR KTIPVDGLWI  420
DMNEISNFID PLPQNQLDDP PYKINNAGVQ RPLSNKTVPA SSIHYGNFTE YDVHNLYGFL  480
ESKATHDALV KDTGKRAFVL SRSTFVGSGK YAAHWTGDNA ATWNDLAYSI PTMLSFGLFG  540
IPMVGADICG FSRGTNEELC RRWIQLGAFY PFARDHSDKY STRQELYLWD SVARSARKAL  600
GLRYRLLPYF YTLMYEAHSX GXPIARPLFF SFPXDXXTYX ISTQFLIGEG VMVSPVLSPG  660
XVSVNAYFPK GXWFNLFNYS XVVXASXGRY VPLDAPEDTI NVHVKGGHVL VMQEAGMSTM  720
AGSQSGFQLL VALDDNGKAE GKVFVDDGEV VEMGGEDLSQ WSLVRFSAGV EGGDLKLKSK  780
VINGIYASDK KISVKNVVVL GLKNESAVNG GLNSISGVNV TDNCVGFGVA EIDGLSLMLG  840
EPFELKVTMA ALNCRFSLEX WAQICRVLQL PSLPSLMSLM WGVXRNALRA GSRVVGDGAI  900
KAFVWAIWLT RNDVIFSDKC VCPHDVVVKT DHFILSWFSA ASEGLRSTLE DSISSIRRSL  960
EFTGPQSEGP RAAHTTEEAM DMILAFLASF FWSDSLVIVN LIRGNIADAL RESKREMSIA  1020
TRGVEREIAA LQLEAATRIL ARQLVRLRQQ ITNLQGTRAQ IRGVATHTQA MYASTSISTG  1080
MKGASKAMKA MNKQMEPAKQ AKVIREFQKQ SSQMDMTIEM MSESIDETLD KDEAEEETEE  1140
LTNQVLDEIG VGVASQLSSA PKGRIATTRK VESVSRNTAP ETPGVDDLEK RQPRNRSFVS  1200
SSSERNPVST LPLLLAPSPS PLRIEESAVC RXNLCATAVG VFFFIRGELR INGDVPAILR  1260
RLPNTVDVRS WCYQRFSLFS RGGSPVAHVN CGQCRTTLMY PSGAPSVKCA VCHYVTNVGM  1320
NTARVPIPVN RPNGLTTMPP STSAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.1	7e-22	LSD family protein

Link Out ? help Back to Top
Ensembl	Dr02242.1