PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr02053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | C3H | ||||||||
Protein Properties | Length: 429aa MW: 45384.8 Da PI: 8.579 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.8 | 3.1e-12 | 21 | 47 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+rtGtC yGdrC+++H++ Dr02053.1 21 PGEPDCAYFMRTGTCGYGDRCRYNHPR 47 5789*********************96 PP | |||||||
2 | zf-CCCH | 36.6 | 7.6e-12 | 69 | 93 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++Ck++H++ Dr02053.1 69 EPVCQYFLRTGTCKFGPTCKYHHPR 93 789********************96 PP | |||||||
3 | zf-CCCH | 36.4 | 8.8e-12 | 114 | 139 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ rtG+Ck+G++CkF+H++ Dr02053.1 114 GEKECSYYVRTGQCKFGATCKFHHPQ 139 7899********************97 PP | |||||||
4 | zf-CCCH | 39.4 | 1e-12 | 271 | 297 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H+p Dr02053.1 271 PGQPECQYYMRTGDCKFGSTCKYHHPP 297 5789*********************97 PP | |||||||
5 | zf-CCCH | 32.3 | 1.7e-10 | 322 | 345 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C f+a+ G Ck+G++CkF H++ Dr02053.1 322 PTCTFYAQHGVCKFGPTCKFDHPM 345 78********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence |
XQLGLGGPGD AAVVVAYPER PGEPDCAYFM RTGTCGYGDR CRYNHPRERV LGAGGLRGGL 60 MDYPERVGEP VCQYFLRTGT CKFGPTCKYH HPRQGSGSAR PVSLNYFGYP LRPGEKECSY 120 YVRTGQCKFG ATCKFHHPQP AGLSVPSPAS SYYPSAQSPS IPSAQPYATM ANWQVARPPS 180 VLPAPYMQGP YGPMLLSPGV VSVPGWSPYP APSSSVVSPG GQQPVQTGSV YGISGQLSPS 240 ASAYPVSYPP LSPPTGPSSS SQKENLYPER PGQPECQYYM RTGDCKFGST CKYHHPPGPG 300 WSIPQTNCTL SPIGFPLRPG APTCTFYAQH GVCKFGPTCK FDHPMGGLSY SPSASSLADI 360 PVAPYPVGSS MATLAPSSSS SELRPDFISN KDSFSTRMPS SETLSSGSIG SIFSKGGSSM 420 AHGEKSSSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-124 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr02053.1 |