PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr01602.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MYB_related
Protein Properties Length: 266aa    MW: 28780.8 Da    PI: 9.893
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr01602.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14130174347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
        Dr01602.1 130 PWTEEEHRTFLAGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 174
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MARKCSHCGN NGHNSRTCSS SSNNGSSIGL KLFGVQLLQM ASSSSYSSSP STSSSSSSSA  60
LHMKKSFSMD CLGPSSSCYH VCSSSSPSSS SSSSLVSIEE ATDHHCKVSN GYLSDGLLGR  120
GAQERKKGVP WTEEEHRTFL AGLEKLGKGD WRGISRNFVT TRTPTQVASH AQKYFLRQTN  180
PNKKKRRSSL FDVVKSSDKF TTPKLIQDSF TLSLAPSSIM SSSSTLDHHH HXXQQQQQQX  240
PPXQXPPQLD LELSISSPGI GTVRVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183187KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.13e-43MYB_related family protein