PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr01592.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 319aa MW: 35918.7 Da PI: 9.6998

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr01592.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	8.1e-06	51	73	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Dr01592.1 51 FVCEICNKGFQRDQNLQLHRRGH 73 89*******************88 PP
2	zf-C2H2	10.8	0.0015	157	175	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++ +H + Dr01592.1 157 DCGTIFSRRDSFITHRAFC 175 9**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MYSTLITSPT TDHQPTSSIP CKKRRNLPGT PDPEAEVIAL SPKTLMATNR FVCEICNKGF 60 QRDQNLQLHR RGHNLPWKLK QRSSKEMKKK VYICPEITCV HHDPSRALGD LTGIKKHFSR 120 KHGEKKWKCD KCSKKYAVHS DWKAHSKICG TREYKCDCGT IFSRRDSFIT HRAFCDALQE 180 ESNEKFSKEL QDISPTWLPL PQAQSACMSA TALLQKAAQM GAIMSTNSNN TPPFQEQMAS 240 HTFTQASSFH GSSPFEEXFG GFMGSGKEER RIDEGMTRDF LGLRALSHGG FGLRVLYGPV 300 QYLSTTKIHN VTKSLHSSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-102	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr01592.1