PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr01555.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

FAR1

Protein Properties

Length: 473aa MW: 53276.8 Da PI: 6.6447

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr01555.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.3	1.9e-16	62	142	1	81
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 +fYn+YA++vGF +++++s +s ++g+ k ++C keg+re ++++ +++ r r + rt+C+a++kv++++ dg +++t++ Dr01555.1 62 EFYNQYARNVGFGTKIRRSFYSLDDGQLNKVMLTCCKEGRREYKNQE-RSTYRLRLSARTDCQARIKVQRKYiDGLFHLTEV 142 6****************************************9999.99999****************99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MVESSVNEMN LDEDSELISA SEPNAKEMAS DSKVDGEERA TEENDGIPRV GLSFKSFDEV 60 YEFYNQYARN VGFGTKIRRS FYSLDDGQLN KVMLTCCKEG RREYKNQERS TYRLRLSART 120 DCQARIKVQR KYIDGLFHLT EVDGLISIFE VRECVKMKDG KEVNKNYGVT YNANEADVQC 180 NCGSFQHGGI LCRHSLSVLN FLEVYEIPSQ YILERWRKDF KRRHTLSCSP NDFIANGPVE 240 RYDNLYKSCL RLAEIGSSSD DKYECALKII HGAADELLVG DGTIDLQHKS MTYDAQANCS 300 IMGGTADGRR SIGDGDEDIP DLMQVRRRGR PPKKRKEALV EKIVEASKKK VSQRKSMTES 360 EPDLLQIGPN ASHFDSHLWA QDGINLTEQV SPTNLSIGTH FGVQVNHPHA IDNQSGLRWG 420 FQPMFQVSIS YTRATSGPMG RLEDAPNHSN EASSYLPPIK TVAVLGRIKR PTG

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MVESSVNEMN LDEDSELISA SEPNAKEMAS DSKVDGEERA TEENDGIPRV GLSFKSFDEV  60
YEFYNQYARN VGFGTKIRRS FYSLDDGQLN KVMLTCCKEG RREYKNQERS TYRLRLSART  120
DCQARIKVQR KYIDGLFHLT EVDGLISIFE VRECVKMKDG KEVNKNYGVT YNANEADVQC  180
NCGSFQHGGI LCRHSLSVLN FLEVYEIPSQ YILERWRKDF KRRHTLSCSP NDFIANGPVE  240
RYDNLYKSCL RLAEIGSSSD DKYECALKII HGAADELLVG DGTIDLQHKS MTYDAQANCS  300
IMGGTADGRR SIGDGDEDIP DLMQVRRRGR PPKKRKEALV EKIVEASKKK VSQRKSMTES  360
EPDLLQIGPN ASHFDSHLWA QDGINLTEQV SPTNLSIGTH FGVQVNHPHA IDNQSGLRWG  420
FQPMFQVSIS YTRATSGPMG RLEDAPNHSN EASSYLPPIK TVAVLGRIKR PTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	8e-25	FAR1 family protein

Link Out ? help Back to Top
Ensembl	Dr01555.1