PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr01389.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92004.5 Da    PI: 6.1541
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr01389.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-181876357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Dr01389.1 18 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
               5679*****************************************************97 PP
2START176.71.4e-551633702204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                laee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++a  v+e+l+d++ W ++++++++++v+ +g  g+l++ +++l 
  Dr01389.1 163 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVSLEPA-KVAEILKDRPSWFRDCRSVDVINVLPTGsnGTLEVLYMQLF 261
                7899******************************************************.8888888888******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rdf+ +Ry+  l +g++v++++S+ s q  p+    +++vRae+lpSg+li+p+++g+s +++v+hvdl+ +++++++r+l++s+++ ++kt
  Dr01389.1 262 APTTLAPaRDFWLLRYTSVLDDGSLVVCERSLGSAQGGPSmpvVPPFVRAEMLPSGYLIRPCDGGGSVIHIVDHVDLEPWSVPEVIRPLYESSAMLAQKT 361
                ***************************************99999******************************************************** PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                ++a++++++
  Dr01389.1 362 TMAAFRQLR 370
                ****99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MIAITACKEG KPGMDPGKYV RYTPEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
QTQSAALATT DTSCESVVTS GQHPLTTPQH PPRDASPAGL MSLAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIVAI SHGCTGVAAR ACGLVSLEPA KVAEILKDRP SWFRDCRSVD  240
VINVLPTGSN GTLEVLYMQL FAPTTLAPAR DFWLLRYTSV LDDGSLVVCE RSLGSAQGGP  300
SMPVVPPFVR AEMLPSGYLI RPCDGGGSVI HIVDHVDLEP WSVPEVIRPL YESSAMLAQK  360
TTMAAFRQLR QVAHEISHSS TTGWGRRPAA LRALSQRLCR GFNEALNGFT DDGWSMVGSD  420
GVDDVTILVN SSSRIIAGFN PGFANGYPSM TNSILCAKAS MLLQNISPAM LLRFLREHRS  480
EWADINIDAY SAAAVKTSPC ALPGSFIGGY GSQVILPLAH TVEFDEFLEV LKLEHVGHGP  540
DIMMPRDLFL LQLCSGVDET AVGTSSELIF APIDASFSDD APIVPSGFRI IPLEAGMDTS  600
SPNHRTLDLA STLEVGPSGT RVHGDISGSC AGMRSVVTIA FQFAFENHLQ DNVVTMARQY  660
VRSIISSVQR VALALSPRLD SHCGLQSPPG SPELVLLACW ICHSYRNHSG VELFKSTNED  720
CESPLKTLWH HSDAILCCSL KAMPIFTFAN QAGLDMLETT LMALQDITLE KIFDDQGRKT  780
LCAEFPNILQ EGFVCLQGGI CVSSMGRPAS YERAMAWKVL NDEKEAHCIC FMFVNWSFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein