PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr01283.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family Trihelix
Protein Properties Length: 357aa    MW: 40086.9 Da    PI: 10.3922
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr01283.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.13e-1520111187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                +W++ e+ +L++a  ++  +l+rg+l++++W+ev++++      +r   r+ +qCk++++ l+k+yk +k++  +     +s++++f++l+a
  Dr01283.1  20 CWSEGETSVLVDAWGDRYVELSRGNLRQKHWQEVADAVnsrpaGARRPPRTDVQCKNRIDTLKKKYKIEKARIVDSGGALTSQWQFFTRLDA 111
                7*************************************99777666678899*******************99998777788*******985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MESSPPRKPP NPALPYREDC WSEGETSVLV DAWGDRYVEL SRGNLRQKHW QEVADAVNSR  60
PAGARRPPRT DVQCKNRIDT LKKKYKIEKA RIVDSGGALT SQWQFFTRLD ALIGSSXSGS  120
KKPSPPSPPP PLALPLPYHR KSSPLPLPAA AAVSSRPEKR HLPALPPVND SFRRRFTTAA  180
AAAAAAAAAS VEVDTGSSSR SFGSPRSSRE RPAKRWKXGR EDETDGIRAL ARAITRFGEM  240
YEKVEGAKQR QMMELERQRM EFAKNLEFQR MEIFVDSQIK LEKIKRSGRS DAVELGSLAA  300
LPFLFDSVSM NLIENYSTFA PNLKGSYNLK AERXKSYYTK QGCYNCKLKE CKPYYTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-41Trihelix family protein