PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr00876.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C3H
Protein Properties Length: 363aa    MW: 40924.3 Da    PI: 6.9695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr00876.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.2e-06731127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ykt++C  f+r G C++  +C+FaHg+
  Dr00876.1  7 YKTKPCILFQR-GRCHR-QNCTFAHGE 31
               9**********.*****.*******96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MLGRRSYKTK PCILFQRGRC HRQNCTFAHG EAELRRAPGP PFNGRRDYKG GDLRDKLDRR  60
HSPQGRYSPG RDRRGHHLLH SKKPLLHDRG LSLSRSPARR RMRQHSDGQS DHSESFKRSI  120
GDDEQMKEDA NSSYDKNDVL EDELRQIEDA IEKLDEDKTH LEVNISFSPE VRFQRFGDQV  180
GLDVSKPSVT EDSSLNIGSD GEANRDNNIN SKNVELPNHA STSKKRSRLH PPYGDEAKLG  240
HAYALHLAPS KQNRGKNSPS IYSLDKRKGS DVMHTMPPTS MAAHAVDELT EAIEIEGRPE  300
ALEANAVKQS GILDNKLTAS YIPPIPLFTK NAYKQFEGDD EEVDVEKVDS GMVDENINSD  360
VEI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.17e-16C3H family protein