PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00789.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CO-like

Protein Properties

Length: 408aa MW: 45226.5 Da PI: 4.6976

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00789.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.2	3.9e-09	21	64	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC+ C ++ H+ H++v Dr00789.1 21 ARACDGCMRRRARWYCAADDAFLCQACDSSVHSAnplarrHQRV 64 578*****************************667888888876 PP
2	CCT	67.8	2.9e-23	350	393	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ Dr00789.1 350 REARVTRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 393 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MSSPEMQQQQ RTAGALGSKT ARACDGCMRR RARWYCAADD AFLCQACDSS VHSANPLARR 60 HQRVRLKTSA PSVLKLDDGP SWHQAITRKA RTPRPKPGVI TSVKSEPVVP DLEAVSADEN 120 NVGEEDQLVY HRVPEFDPLL AEFRSPDPVI GGLDDVHGFG SKTEERELPE SGSLAGFXPA 180 DDDVDLAEFA ADMETLLGRG LEEDAFCMES LGIGFSGEED KTMTMMMKME MKEEMNEEED 240 DDERMDLDGR EMVLELNFDS GSTAPEEVEV EVEVEEKIVD DKRMKLRLNY EAVIDAWSSS 300 CQGSSPWTDG DRPKLNPDEC LPEFKGGMWP VSGQVTGPIS GGGGGGDGGR EARVTRYREK 360 RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRSSFPVVGA GVGPSFGF

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MSSPEMQQQQ RTAGALGSKT ARACDGCMRR RARWYCAADD AFLCQACDSS VHSANPLARR  60
HQRVRLKTSA PSVLKLDDGP SWHQAITRKA RTPRPKPGVI TSVKSEPVVP DLEAVSADEN  120
NVGEEDQLVY HRVPEFDPLL AEFRSPDPVI GGLDDVHGFG SKTEERELPE SGSLAGFXPA  180
DDDVDLAEFA ADMETLLGRG LEEDAFCMES LGIGFSGEED KTMTMMMKME MKEEMNEEED  240
DDERMDLDGR EMVLELNFDS GSTAPEEVEV EVEVEEKIVD DKRMKLRLNY EAVIDAWSSS  300
CQGSSPWTDG DRPKLNPDEC LPEFKGGMWP VSGQVTGPIS GGGGGGDGGR EARVTRYREK  360
RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRSSFPVVGA GVGPSFGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	377	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	6e-73	CO-like family protein

Link Out ? help Back to Top
Ensembl	Dr00789.1