PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00678.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

NAC

Protein Properties

Length: 368aa MW: 41314.5 Da PI: 6.159

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00678.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.9	8.4e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 + pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ Dr00678.1 15 MLPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGTKC 113 579*************************.89***********9888999***********************************956667 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg ktdW+mhe+rl Dr00678.1 114 IGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142 *************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MMEERSEMDK VDEVMLPGFR FHPTDEELVG FYLKRKIQQK PLSIELIRQL DIYKYDPWDL 60 PKMATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG TKCIGLKKSL 120 VFYKGRAAKG IKTDWMMHEF RLPSLSDSSL PKXPLDKNIP PNDSWAICRI FKKTNTMAQR 180 ALSHSWVSQS QESSITTASD LYSVAALQHP NAFDQNGGFQ QQNSINSLDV TSFTAINLLA 240 PLSSNISTAS AATEVIPSNL IFSPSELSLP LPSMLMSLPP SSIDFGQQAQ VDLAVEMSGN 300 IINQSNGEDD LGMRKSSNLQ WFPFSLAPGL CEDEWKQVQL PWESSTTAAS TTCPSELSTN 360 YSTNKCYT

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MMEERSEMDK VDEVMLPGFR FHPTDEELVG FYLKRKIQQK PLSIELIRQL DIYKYDPWDL  60
PKMATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG TKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSLSDSSL PKXPLDKNIP PNDSWAICRI FKKTNTMAQR  180
ALSHSWVSQS QESSITTASD LYSVAALQHP NAFDQNGGFQ QQNSINSLDV TSFTAINLLA  240
PLSSNISTAS AATEVIPSNL IFSPSELSLP LPSMLMSLPP SSIDFGQQAQ VDLAVEMSGN  300
IINQSNGEDD LGMRKSSNLQ WFPFSLAPGL CEDEWKQVQL PWESSTTAAS TTCPSELSTN  360
YSTNKCYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-101	NAC family protein

Link Out ? help Back to Top
Ensembl	Dr00678.1