PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00016.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

FAR1

Protein Properties

Length: 695aa MW: 79225.1 Da PI: 8.6296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00016.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.4	1.9e-26	191	279	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s++sk n+++++ +fvCs+eg+ +e++ +k+r++ a+ r gC+a+l+v ++ dgkw+vtkl+++HnH++ Dr00016.1 191 FYIAYAGRVGFSVRIARSRRSKCNESVIMLRFVCSREGFCREKRVVeGKKTRKRAASVREGCRAMLEVIRRGDGKWVVTKLVKDHNHQV 279 9***********************************9877665536788889999****************************85 PP
2	FAR1	37.1	1e-11	313	391	2	78
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwev 78 fY +YA++vGF+ r+++s++s ++++ ++ ++vCs++ +++ +++++e+++ r gC+a +++ ++++g++ + Dr00016.1 313 FYYSYASRVGFEARVRQSRRSLHDESLKMLKLVCSRHRYHSGRDNNSEDAKMglLLDPAREGCEALFEIIRKDNGRYDL 391 9****************************************9995555553355779***********9999976 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MEALQLVEKE METLKDVKDL EISNQRIIQE DVGDDAKEGG HSSIHESPCL ILYMLEQKVA 60 DSRSSGRNGG FSVRRRGGMG FQSFRMMDGG GSGDDGLIED HHGALEDDSI NFWATLGVSP 120 HVHVVDPVAV PSAPHHEQLQ HHQQQQQQHQ HQHLELVDQP VRRELFAMEA DPRLEPFLGM 180 EFESGEAAKT FYIAYAGRVG FSVRIARSRR SKCNESVIML RFVCSREGFC REKRVVEGKK 240 TRKRAASVRE GCRAMLEVIR RGDGKWVVTK LVKDHNHQVG LPSKVHYIAT EGDTELEPYM 300 GMEFESLEIA KTFYYSYASR VGFEARVRQS RRSLHDESLK MLKLVCSRHR YHSGRDNNSE 360 DAKMGLLLDP AREGCEALFE IIRKDNGRYD LRDNAYMQFL FSIRHQWVPV FLKDIFFAEV 420 FMSQKLDNFD KVVQKYFTTK TPLRVAVRQL GQALANRYEK EAQEDFVTMY NKPFLRTASP 480 VEKQAAGIYT RTIFNRFQEE FLESLGYHVD KIEDGVISKF RVVRNGDAYT VTYNASETKA 540 HCTCCLFEFS GILCRHALKV FIVVGMRKLP KDFILKRWTR NAKSGAVLDD CGVGFQSNCE 600 EPSTSRYSDL CRDANRCAKE GATSVEVYKV AKDALQKAIA EVVSVKQQKE QETLQSYIKS 660 QKKQSKKPGK GSPRDASRKS LKKLAPKESS LEIDS

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MEALQLVEKE METLKDVKDL EISNQRIIQE DVGDDAKEGG HSSIHESPCL ILYMLEQKVA  60
DSRSSGRNGG FSVRRRGGMG FQSFRMMDGG GSGDDGLIED HHGALEDDSI NFWATLGVSP  120
HVHVVDPVAV PSAPHHEQLQ HHQQQQQQHQ HQHLELVDQP VRRELFAMEA DPRLEPFLGM  180
EFESGEAAKT FYIAYAGRVG FSVRIARSRR SKCNESVIML RFVCSREGFC REKRVVEGKK  240
TRKRAASVRE GCRAMLEVIR RGDGKWVVTK LVKDHNHQVG LPSKVHYIAT EGDTELEPYM  300
GMEFESLEIA KTFYYSYASR VGFEARVRQS RRSLHDESLK MLKLVCSRHR YHSGRDNNSE  360
DAKMGLLLDP AREGCEALFE IIRKDNGRYD LRDNAYMQFL FSIRHQWVPV FLKDIFFAEV  420
FMSQKLDNFD KVVQKYFTTK TPLRVAVRQL GQALANRYEK EAQEDFVTMY NKPFLRTASP  480
VEKQAAGIYT RTIFNRFQEE FLESLGYHVD KIEDGVISKF RVVRNGDAYT VTYNASETKA  540
HCTCCLFEFS GILCRHALKV FIVVGMRKLP KDFILKRWTR NAKSGAVLDD CGVGFQSNCE  600
EPSTSRYSDL CRDANRCAKE GATSVEVYKV AKDALQKAIA EVVSVKQQKE QETLQSYIKS  660
QKKQSKKPGK GSPRDASRKS LKKLAPKESS LEIDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-58	FAR1 family protein

Link Out ? help Back to Top
Ensembl	Dr00016.1