PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00006.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

FAR1

Protein Properties

Length: 565aa MW: 64220.2 Da PI: 7.5131

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00006.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.2	8.7e-26	133	222	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y +YA++vGF vr++ks++s++++++++r+fvC++eg+++++ + k++r+r +tr gC a+++v ++++gkw+vtkl+++H+H + Dr00006.1 133 EYYVAYANRVGFGVRMNKSRRSRKDDTVIMRRFVCTREGFHSKRVIYdDGKKKRKRGTTREGCMAMIEVIRKDHGKWVVTKLVTDHTHMV 222 69**************************************9987647889999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MDRSSQWVSV KNNRAQGEPE PALLLQSGKH IVDSRFSSEN QTLNSQEGPE QRSREIDTTF 60 PAGALSEDDG LMRDSGNMDL NNNNGDPHMA LALGALGVEL NQHIQSHLLQ MENSDIGEPL 120 IGMEFDTDEA AKEYYVAYAN RVGFGVRMNK SRRSRKDDTV IMRRFVCTRE GFHSKRVIYD 180 DGKKKRKRGT TREGCMAMIE VIRKDHGKWV VTKLVTDHTH MVALPGKIRP QLEKSSFLND 240 SAYLRFDQAM ATQYEKEAEA DFATVYSKPP LKSPSPMEKQ AAEIYTNAVF DKFQEEFVES 300 LGYYVERFEN GPVSKYSVAK EEDSSKTYIV SFSESEKKAT CSCCKFESSG ILCRHILRVF 360 FIVGVRVLPE EYILKRWSRN AMGSVVLDER VIEPGLSFQE YLVAWYNDLC LDAVKYGMEG 420 AISAEVYKVA KIALHNAFAE VVAAKNMQKK GQQNLQRFAR LQKMHYKMPL PKLQTKKTPT 480 KSGQSEVRSK SSKEDKLPAP DTFPGYQIST EMQLILDLME VLIKDECNFM VGSSSLYTLI 540 CLEVCQIAEL RRQRFALGYD SLWHT

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MDRSSQWVSV KNNRAQGEPE PALLLQSGKH IVDSRFSSEN QTLNSQEGPE QRSREIDTTF  60
PAGALSEDDG LMRDSGNMDL NNNNGDPHMA LALGALGVEL NQHIQSHLLQ MENSDIGEPL  120
IGMEFDTDEA AKEYYVAYAN RVGFGVRMNK SRRSRKDDTV IMRRFVCTRE GFHSKRVIYD  180
DGKKKRKRGT TREGCMAMIE VIRKDHGKWV VTKLVTDHTH MVALPGKIRP QLEKSSFLND  240
SAYLRFDQAM ATQYEKEAEA DFATVYSKPP LKSPSPMEKQ AAEIYTNAVF DKFQEEFVES  300
LGYYVERFEN GPVSKYSVAK EEDSSKTYIV SFSESEKKAT CSCCKFESSG ILCRHILRVF  360
FIVGVRVLPE EYILKRWSRN AMGSVVLDER VIEPGLSFQE YLVAWYNDLC LDAVKYGMEG  420
AISAEVYKVA KIALHNAFAE VVAAKNMQKK GQQNLQRFAR LQKMHYKMPL PKLQTKKTPT  480
KSGQSEVRSK SSKEDKLPAP DTFPGYQIST EMQLILDLME VLIKDECNFM VGSSSLYTLI  540
CLEVCQIAEL RRQRFALGYD SLWHT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	187	RRSRKDDTVIMRRFVCTREGFHSKRVIYDDGKKKRK
2	183	208	KKKRKRGTTREGCMAMIEVIRKDHGK
3	184	209	KKKRKRGTTREGCMAMIEVIRKDHGK
4	185	210	KKKRKRGTTREGCMAMIEVIRKDHGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	2e-50	FAR1 family protein

Link Out ? help Back to Top
Ensembl	Dr00006.1