PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028557281.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GRF

Protein Properties

Length: 463aa MW: 51547.9 Da PI: 9.6244

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028557281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.5	1.2e-23	188	232	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hr+r+rsrk++e+ XP_028557281.1 188 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRSRNRSRKHVES 232 79****************************************996 PP
2	QLQ	62.8	9e-22	121	157	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FTaaQ+ +L++Q+l++KyL+a++PvPp+Ll +iq+ XP_028557281.1 121 QPFTAAQWRELEHQALIFKYLVAGVPVPPDLLIPIQR 157 69*********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MTRGKQKIEA QKRNAEKNQK SKGSQLEARA VALKSSCPIC KVQLANGKRE AKLYSRVLAL 60 LSSHIFFFHF SLFFTIFFLP LSSSLLPVGE EMSSMAAAGS GGKGWMQMPS TAVAAEMGWR 120 QPFTAAQWRE LEHQALIFKY LVAGVPVPPD LLIPIQRSLE ALPSRFYHHY PAHSSPVGYF 180 SYYGKKLDPE PGRCRRTDGK KWRCSKDAHP DSKYCERHMH RSRNRSRKHV ESKSNISPQQ 240 SQSNISSSST STSHVALGSS GSFQNISMQS AMTGASKTQG LCSGTSASSH LQSDSQHYGK 300 EYRYLHGAKI DLDKHNFFSE YPGSLQTDLS VNSSPDNSWG LMPSQVPSFS ISKGKTSNPY 360 GHYSSQLHAM QNLNEVTMRS IPKQQEQLHS YFKSNFGLPD PAKQECQGLG TAFNEWPKAR 420 ESWLDLKDEH SERNSFSATQ LSISIPMASS DFSTTTCCSP NDD

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MTRGKQKIEA QKRNAEKNQK SKGSQLEARA VALKSSCPIC KVQLANGKRE AKLYSRVLAL  60
LSSHIFFFHF SLFFTIFFLP LSSSLLPVGE EMSSMAAAGS GGKGWMQMPS TAVAAEMGWR  120
QPFTAAQWRE LEHQALIFKY LVAGVPVPPD LLIPIQRSLE ALPSRFYHHY PAHSSPVGYF  180
SYYGKKLDPE PGRCRRTDGK KWRCSKDAHP DSKYCERHMH RSRNRSRKHV ESKSNISPQQ  240
SQSNISSSST STSHVALGSS GSFQNISMQS AMTGASKTQG LCSGTSASSH LQSDSQHYGK  300
EYRYLHGAKI DLDKHNFFSE YPGSLQTDLS VNSSPDNSWG LMPSQVPSFS ISKGKTSNPY  360
GHYSSQLHAM QNLNEVTMRS IPKQQEQLHS YFKSNFGLPD PAKQECQGLG TAFNEWPKAR  420
ESWLDLKDEH SERNSFSATQ LSISIPMASS DFSTTTCCSP NDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-42	GRF family protein