PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028557273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | Trihelix | ||||||||
Protein Properties | Length: 514aa MW: 57056.1 Da PI: 4.6996 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.3 | 9.5e-14 | 61 | 134 | 2 | 76 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 Wt qevl+L+ ++e+ ++ + ++W+ +s+ +++ + rs++qCk kwe l +y ki ++e + se+s XP_028557273.1 61 WTVQEVLVLLSEIVAIDEAWLKELSSYQRWKMISDSCMAMNVVRSSNQCKRKWEMLLDDYNKIMKWEPQS-SEDS 134 **********99999999999999********************************************95.5554 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence |
MQEAQPVVQA LAAAHCNEDT TSHQSPSKRK IRVHSQPKHD NSSSQTPRSS RYTRSQAAPD 60 WTVQEVLVLL SEIVAIDEAW LKELSSYQRW KMISDSCMAM NVVRSSNQCK RKWEMLLDDY 120 NKIMKWEPQS SEDSYWLLPE DRRKDYGLPV SFQKEVFDAM DAVIQVQQQQ SDSNNSDPEL 180 IISVHKFETS KMNADSETSV LYLPSVHLEE ELVTTSKILE VEASTLKSPD KTFVLAGLHS 240 TSASVSIGDE ITPSKIPEVQ ELTASSKISE ERPVVEELNI TSKNLQIRTE VEELIATSKR 300 PDVKELLTTS KSSEEGLEVV EPNTTSKNLG ERPEVQDLIT TSKSLELEDL ITASKSPEVD 360 ELITTSKSSK KALVIAVSGE EELITTSKSS EAEELITTSK SSDKASVITV FDQVELVPKS 420 KSTKKARLIT GKLQENAEHV CAILRSELQD GASHSPLPID SLKPSLAETE FARRQADELI 480 KALGELTNSL DELCDHISKR GCAGASEGRC VVWL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 3e-33 | Trihelix family protein |