PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028557243.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 467aa MW: 51899.8 Da PI: 6.5613

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028557243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	21	65	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd+ll + v+ +G+++W+ Ia+ ++ +t+ qc+ rw++yl XP_028557243.1 21 SWTQEEDDLLREQVAVHGSDNWTIIAANFN-DKTGRQCRRRWLTYL 65 7***************************.***********97 PP
2	Myb_DNA-binding	42.2	1.8e-13	71	114	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + XP_028557243.1 71 KGGWSQEEDMLLCEAQKIFGNR-WTEIAKVVA-GRTDNAVKNRFST 114 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MSSDYAMVAA TQAKKDRHMV SWTQEEDDLL REQVAVHGSD NWTIIAANFN DKTGRQCRRR 60 WLTYLNTECK KGGWSQEEDM LLCEAQKIFG NRWTEIAKVV AGRTDNAVKN RFSTLCKKRA 120 KHHTISKENN DSCTHPSNKK IMVEPSANKQ QTGSGSSDNA EDFSSYEKLA TTHGISGGRS 180 RPPLTVLTQN FNNLRCLSAQ CHLDSSKPTA CDTIANCEVQ GNFLRRDDPK LTVLLQQAEL 240 LSSLAVKAYS ENKNQSPDDS WKELQNYLIQ NREEGTLSSF SGMDFLLDDF EGVFKDFQCV 300 DTELQLSRRD ADQDGCQTSS VMSTGCTHDD PAINMDEHLL EHCSVGCNEG QTHQGTPAPV 360 KFVCQVSFPG GAMTSSLELA QSGENILVSS ISEFNSPLKT IPLFHSFTEG IPSPEFSSSE 420 RKFLLSVLRV PSSKPSSNRN QTSSCKRDPR PNSSNSHSCK RVLLNSL

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MSSDYAMVAA TQAKKDRHMV SWTQEEDDLL REQVAVHGSD NWTIIAANFN DKTGRQCRRR  60
WLTYLNTECK KGGWSQEEDM LLCEAQKIFG NRWTEIAKVV AGRTDNAVKN RFSTLCKKRA  120
KHHTISKENN DSCTHPSNKK IMVEPSANKQ QTGSGSSDNA EDFSSYEKLA TTHGISGGRS  180
RPPLTVLTQN FNNLRCLSAQ CHLDSSKPTA CDTIANCEVQ GNFLRRDDPK LTVLLQQAEL  240
LSSLAVKAYS ENKNQSPDDS WKELQNYLIQ NREEGTLSSF SGMDFLLDDF EGVFKDFQCV  300
DTELQLSRRD ADQDGCQTSS VMSTGCTHDD PAINMDEHLL EHCSVGCNEG QTHQGTPAPV  360
KFVCQVSFPG GAMTSSLELA QSGENILVSS ISEFNSPLKT IPLFHSFTEG IPSPEFSSSE  420
RKFLLSVLRV PSSKPSSNRN QTSSCKRDPR PNSSNSHSCK RVLLNSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	5e-95	MYB family protein