PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028557014.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 1146aa MW: 129056 Da PI: 8.1068

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028557014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.3	1.1e-22	425	511	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA ++GFsvrk s ks +n + +r +vCs+ g+r ++ + +++++r+etrtgC a++ +k ++ g+++vt+++ +H+H+la XP_028557014.1 425 EYYVTYAANIGFSVRKGLSDKSAKNV-TRSRVYVCSRGGFRPKNAVS--EAKKSRPETRTGCCARMAIKATSFGRYRVTEFVADHSHQLA 511 69*****************96655.999********99988..99***********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1146 aa Download sequence
MVLISEISKE GCTKLKQRDG VEDGGGGSDG GIVLDSQNAV AEVAELLVEG GSVPGENSLK 60 EADMSAGKPP YNEYALRVAY IMRSYLHTRP GSGSADVAAS GEVSAGGDRC RALMEVVKKE 120 TGRWFVSTVV LEHAHSLTPP PDPAGTVAGS RLVPAVGMEF DSISMAKAFY YTYSEKMGFK 180 ARTGSGRRSR GNPSLVMQRF LCSKGNCPLS GNSAGQSMVK RKRGPYRKIT SNTGNDGNLD 240 SAAEVFLGET CAEEAGVAGD EMRIEGQSGQ PEKIETFQEK DGMTKPSVSD SDLGSNVAAV 300 GMDGQKPPLG GIPAQSRLLR ELGIRVSRYT HEERRDIILR YLRKRNNRQV VDRSVKVPSR 360 QALAERRQRG FGGKFLSKEE TQSQALTKPQ ETIDEDPEVP PEVVAKAGGV PMVGMGFESE 420 DKAYEYYVTY AANIGFSVRK GLSDKSAKNV TRSRVYVCSR GGFRPKNAVS EAKKSRPETR 480 TGCCARMAIK ATSFGRYRVT EFVADHSHQL ALPLNIQMLK SQKLLSNAQH KNQQNADLIP 540 AHYKNYVRGK RIRSMKVGDA GTILEYLQKM KGCNPSFYYA IQVDEDDKMT NVFWADARSI 600 MDYYYFGDVV CFHTPYRTNV CDRPLALFIG VNHHKQIVIF GSAFVYDETV ETFKWLFETF 660 QTAVAGKQPK TIFLDQCREI DDAIAAIWPG TSQRLCPWQL YQHAFKHLGE FFQTSESFVH 720 DFCRCIFDFE EEEEFMASWS IMLEKYNLKE NEWLKKIYEK KEKWAPAYSR DTFCADLQTT 780 LRSECFNDIL KEWLNQEADL SYFFRQYEKL LEEKRYAELQ ADYHANQGIP RIPHLRMLWQ 840 AANMYTPAMF EIFRSEFELF MNCVVCSCGE IGTFSEYEVT LKGKTRAHFV RFDSLDGTVI 900 CSCKKFFFVG IQCCHVLKVL DFRDIKELPQ QFILKRWRKD AKSGSLRDNQ GLVLEEDPNS 960 TMTKRYNSLC RILYRIAERA AENMDTFTVM AGQSDQLIEQ VERILQTKLL EKPPLNNALK 1020 VQAQNPAEIQ ISLDDNSEAL KVNCKKRKEA VVRRRQQAGL QVNKRHKLNK GQAEECNDAA 1080 RDLEPPLSTT DVIPQISSSN QFIAQSHFMQ GPYVTSHHFG LATAQGFHAM TQFGQDSASV 1140 LQQTLI

Sequence ? help Back to Top

Protein Sequence Length: 1146 aa Download sequence

MVLISEISKE GCTKLKQRDG VEDGGGGSDG GIVLDSQNAV AEVAELLVEG GSVPGENSLK  60
EADMSAGKPP YNEYALRVAY IMRSYLHTRP GSGSADVAAS GEVSAGGDRC RALMEVVKKE  120
TGRWFVSTVV LEHAHSLTPP PDPAGTVAGS RLVPAVGMEF DSISMAKAFY YTYSEKMGFK  180
ARTGSGRRSR GNPSLVMQRF LCSKGNCPLS GNSAGQSMVK RKRGPYRKIT SNTGNDGNLD  240
SAAEVFLGET CAEEAGVAGD EMRIEGQSGQ PEKIETFQEK DGMTKPSVSD SDLGSNVAAV  300
GMDGQKPPLG GIPAQSRLLR ELGIRVSRYT HEERRDIILR YLRKRNNRQV VDRSVKVPSR  360
QALAERRQRG FGGKFLSKEE TQSQALTKPQ ETIDEDPEVP PEVVAKAGGV PMVGMGFESE  420
DKAYEYYVTY AANIGFSVRK GLSDKSAKNV TRSRVYVCSR GGFRPKNAVS EAKKSRPETR  480
TGCCARMAIK ATSFGRYRVT EFVADHSHQL ALPLNIQMLK SQKLLSNAQH KNQQNADLIP  540
AHYKNYVRGK RIRSMKVGDA GTILEYLQKM KGCNPSFYYA IQVDEDDKMT NVFWADARSI  600
MDYYYFGDVV CFHTPYRTNV CDRPLALFIG VNHHKQIVIF GSAFVYDETV ETFKWLFETF  660
QTAVAGKQPK TIFLDQCREI DDAIAAIWPG TSQRLCPWQL YQHAFKHLGE FFQTSESFVH  720
DFCRCIFDFE EEEEFMASWS IMLEKYNLKE NEWLKKIYEK KEKWAPAYSR DTFCADLQTT  780
LRSECFNDIL KEWLNQEADL SYFFRQYEKL LEEKRYAELQ ADYHANQGIP RIPHLRMLWQ  840
AANMYTPAMF EIFRSEFELF MNCVVCSCGE IGTFSEYEVT LKGKTRAHFV RFDSLDGTVI  900
CSCKKFFFVG IQCCHVLKVL DFRDIKELPQ QFILKRWRKD AKSGSLRDNQ GLVLEEDPNS  960
TMTKRYNSLC RILYRIAERA AENMDTFTVM AGQSDQLIEQ VERILQTKLL EKPPLNNALK  1020
VQAQNPAEIQ ISLDDNSEAL KVNCKKRKEA VVRRRQQAGL QVNKRHKLNK GQAEECNDAA  1080
RDLEPPLSTT DVIPQISSSN QFIAQSHFMQ GPYVTSHHFG LATAQGFHAM TQFGQDSASV  1140
LQQTLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	345	RRDIILRYLRKR
2	1040	1048	LKVNCKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-111	FAR1 family protein