PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028556945.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 635aa    MW: 69458.4 Da    PI: 5.9612
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028556945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.51.5e-872796342374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+lL+++Ae v+sg++  aq +Larl+++  s  g+p+ R a+yf+ AL+  +++       + +++++s+ +++ +l+a+k+fsevsPi++f  
  XP_028556945.1 279 VDLLFKAAELVESGNFVGAQVILARLNHHlPSRIGKPLLRSAFYFKGALQVLVNS------VSPQATASSPLDVVLKLSAFKAFSEVSPIPQFIC 367
                     789************************99899999*******************9......33455555566799******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +ta qa+ e++  ++++HiiDfdis G+QW +++q+La+R+++    l+iT+++sp++++  el+ ++e+L +fA+ l++pfe+++   ++++  
  XP_028556945.1 368 FTATQALIEELGAADCIHIIDFDISFGTQWSSFMQELAQRQSQRIlLLKITAFVSPSAFHPLELHLIKENLCRFAADLNIPFEIRISDIEAFDPA 462
                     *****************************************776659**************************************9555555556 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     e+  L+  ++Ea+aVnl ++  +++        +  ++L lvk+l Pk+v+ v++  d+ + +F ++fl+al+ +++++ds++a  +++ +  +k
  XP_028556945.1 463 EILILSAVSNEAIAVNLPVEAWQVP--------TFATLLGLVKQLLPKIVISVDHGFDRFDLPFSHHFLHALQSCVTVLDSIDAA-GTNLDVVSK 548
                     666667777**************99........3457*********************************************998.67779**** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+++l+++i+n++   +++    +e+   W   +e+aGFkpv++s+++++qa++ll++v+  g++ve++++sl l W++ +L svS+Wr
  XP_028556945.1 549 IEKFVLQPKIENCIIRCHRA----TEKCLPWLTLFESAGFKPVQFSNFTEMQAECLLKRVQISGFSVEKRRASLHLLWQEGELASVSVWR 634
                     *************9999998....89999************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    
MKGVPFNLQW NGALQIAESQ QSGTVVEEKG SAFWVPGGHK RTKGGVLEPL SSLNQTRSPS  60
SPSSTSTLTS LGGGAAGSID TAGAAVVFNN VALKCPNLNF TSAAAANSLN DWMLSDSTAS  120
PGQEQNFLHL IMGDLDDKGL GLIDSVVGFA PISFASLASS DDLFQISCDS NRNNPSSLQR  180
QPPCVKTPNF SPLAPSVTTP PQISLPPAMF FQESIVEKSQ LFGPNFFFHQ YQLNENSLNP  240
GIFFPLPSCT PSQQPDQSLN FTQVHHFPYP QQQQQQVVVD LLFKAAELVE SGNFVGAQVI  300
LARLNHHLPS RIGKPLLRSA FYFKGALQVL VNSVSPQATA SSPLDVVLKL SAFKAFSEVS  360
PIPQFICFTA TQALIEELGA ADCIHIIDFD ISFGTQWSSF MQELAQRQSQ RILLLKITAF  420
VSPSAFHPLE LHLIKENLCR FAADLNIPFE IRISDIEAFD PAEILILSAV SNEAIAVNLP  480
VEAWQVPTFA TLLGLVKQLL PKIVISVDHG FDRFDLPFSH HFLHALQSCV TVLDSIDAAG  540
TNLDVVSKIE KFVLQPKIEN CIIRCHRATE KCLPWLTLFE SAGFKPVQFS NFTEMQAECL  600
LKRVQISGFS VEKRRASLHL LWQEGELASV SVWRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-88GRAS family protein