PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556732.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 526aa MW: 57624.9 Da PI: 4.7661

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556732.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.9e-17	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d vk++G g+W+++ r g++R++k+c++rw ++l XP_028556732.1 42 KGPWTSTEDAILIDFVKKHGEGNWNSVQRNTGLRRCGKSCRLRWANHL 89 79******************************************9986 PP
2	Myb_DNA-binding	43.1	9.8e-14	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ T+eE+e +++ +++ G++ W+ a+ ++ gRt++++k++w++ XP_028556732.1 95 KGALTPEEEECIIQMHAKIGNK-WAQMAALLP-GRTDNEIKNFWNT 138 6788****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MCAVKNDGDT ERLPKEQPDS SPNDEGSWSG SPTAGEGVVL KKGPWTSTED AILIDFVKKH 60 GEGNWNSVQR NTGLRRCGKS CRLRWANHLR PELKKGALTP EEEECIIQMH AKIGNKWAQM 120 AALLPGRTDN EIKNFWNTRT KRLQRAGLPL YPASSICSGD SNENQLIQID GEFCNGDIEN 180 SGVLHEAMNE MQEFGFDPCK TTIGQVSYAP LSDLLSQGLE WPYTRSLLNQ GLNDIKRNIV 240 SETFLPGYHG SLGSVVSNFK ELTSGHSESM YRNLGLGFSY DADPDMKNLL SCSIPGSHGL 300 SHGNFSASRH SAGTVKLELP SLQCPDTNYS NWMTCPDTPP YNILVQSPGN VSLMSDCASP 360 RSNGLLEALV QESQKINCGK NQSSEKSSCS SAITLSDIME STTVNFCTAE WEETCDQRSP 420 FSQSVDEHAQ ITSNSLEELT PKATSGSDGK MVVEQDSTTS TPDTQPGFLR PDALLGSNWN 480 LRDSRRTKEN SDSFCALQGD NLSPAEVSLD SCPWNSMPSI HQVPEH

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MCAVKNDGDT ERLPKEQPDS SPNDEGSWSG SPTAGEGVVL KKGPWTSTED AILIDFVKKH  60
GEGNWNSVQR NTGLRRCGKS CRLRWANHLR PELKKGALTP EEEECIIQMH AKIGNKWAQM  120
AALLPGRTDN EIKNFWNTRT KRLQRAGLPL YPASSICSGD SNENQLIQID GEFCNGDIEN  180
SGVLHEAMNE MQEFGFDPCK TTIGQVSYAP LSDLLSQGLE WPYTRSLLNQ GLNDIKRNIV  240
SETFLPGYHG SLGSVVSNFK ELTSGHSESM YRNLGLGFSY DADPDMKNLL SCSIPGSHGL  300
SHGNFSASRH SAGTVKLELP SLQCPDTNYS NWMTCPDTPP YNILVQSPGN VSLMSDCASP  360
RSNGLLEALV QESQKINCGK NQSSEKSSCS SAITLSDIME STTVNFCTAE WEETCDQRSP  420
FSQSVDEHAQ ITSNSLEELT PKATSGSDGK MVVEQDSTTS TPDTQPGFLR PDALLGSNWN  480
LRDSRRTKEN SDSFCALQGD NLSPAEVSLD SCPWNSMPSI HQVPEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	3e-76	MYB family protein