PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556730.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 539aa MW: 59284.8 Da PI: 4.889

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6.1e-17	57	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d vk++G g+W+++ r g++R++k+c++rw ++l XP_028556730.1 57 KGPWTSTEDAILIDFVKKHGEGNWNSVQRNTGLRRCGKSCRLRWANHL 104 79******************************************9986 PP
2	Myb_DNA-binding	43	1e-13	110	153	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ T+eE+e +++ +++ G++ W+ a+ ++ gRt++++k++w++ XP_028556730.1 110 KGALTPEEEECIIQMHAKIGNK-WAQMAALLP-GRTDNEIKNFWNT 153 6788****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MERESIGSAR RRFLNMCAVK NDGDTERLPK EQPDSSPNDE GSWSGSPTAG EGVVLKKGPW 60 TSTEDAILID FVKKHGEGNW NSVQRNTGLR RCGKSCRLRW ANHLRPELKK GALTPEEEEC 120 IIQMHAKIGN KWAQMAALLP GRTDNEIKNF WNTRTKRLQR AGLPLYPASS ICSGDSNENQ 180 LIQIDGEFCN GDIENSGVLH EAMNEMQEFG FDPCKTTIGQ VSYAPLSDLL SQGLEWPYTR 240 SLLNQGLNDI KRNIVSETFL PGYHGSLGSV VSNFKELTSG HSESMYRNLG LGFSYDADPD 300 MKNLLSCSIP GSHGLSHGNF SASRHSAGTV KLELPSLQCP DTNYSNWMTC PDTPPYNILV 360 QSPGNVSLMS DCASPRSNGL LEALVQESQK INCGKNQSSE KSSCSSAITL SDIMESTTVN 420 FCTAEWEETC DQRSPFSQSV DEHAQITSNS LEELTPKATS DGKMVVEQDS TTSTPDTQPG 480 FLRPDALLGS NWNLRDSRRT KENSDSFCAL QGDNLSPAEV SLDSCPWNSM PSIHQVPEH

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MERESIGSAR RRFLNMCAVK NDGDTERLPK EQPDSSPNDE GSWSGSPTAG EGVVLKKGPW  60
TSTEDAILID FVKKHGEGNW NSVQRNTGLR RCGKSCRLRW ANHLRPELKK GALTPEEEEC  120
IIQMHAKIGN KWAQMAALLP GRTDNEIKNF WNTRTKRLQR AGLPLYPASS ICSGDSNENQ  180
LIQIDGEFCN GDIENSGVLH EAMNEMQEFG FDPCKTTIGQ VSYAPLSDLL SQGLEWPYTR  240
SLLNQGLNDI KRNIVSETFL PGYHGSLGSV VSNFKELTSG HSESMYRNLG LGFSYDADPD  300
MKNLLSCSIP GSHGLSHGNF SASRHSAGTV KLELPSLQCP DTNYSNWMTC PDTPPYNILV  360
QSPGNVSLMS DCASPRSNGL LEALVQESQK INCGKNQSSE KSSCSSAITL SDIMESTTVN  420
FCTAEWEETC DQRSPFSQSV DEHAQITSNS LEELTPKATS DGKMVVEQDS TTSTPDTQPG  480
FLRPDALLGS NWNLRDSRRT KENSDSFCAL QGDNLSPAEV SLDSCPWNSM PSIHQVPEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	5e-76	MYB family protein