PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556581.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 769aa MW: 86417.8 Da PI: 6.1191

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.6	1e-22	107	208	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_028556581.1 107 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 197 99***************************8544444..48**********************************************..888 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l++++ r+ XP_028556581.1 198 KNQLLLGIQRA 208 88889998775 PP
2	Auxin_resp	116.6	2.1e-38	233	316	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPra++seFv++++k++ka+ ++vs+GmRf+m fete+ss rr++Gt++g+sdldp+rWpnS+Wrs+k XP_028556581.1 233 AAHAAATNSRFTIFYNPRACPSEFVIPLSKYVKAVFhTRVSIGMRFRMLFETEESSVRRYMGTITGTSDLDPLRWPNSHWRSVK 316 79******************************87599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MLELGTMARL CWATGLLADC GDSRYLLSSG AQRAASTNKE VEGHIPNYPS LPPQLMCQLH 60 NVTMHADPET DDVYAQMTLQ PLSPEEQKNS YVPIEMGVAS KQPMNYFCKT LTASDTSTHG 120 GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV 180 SAKRLVAGDS VLFIWNEKNQ LLLGIQRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN 240 SRFTIFYNPR ACPSEFVIPL SKYVKAVFHT RVSIGMRFRM LFETEESSVR RYMGTITGTS 300 DLDPLRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSVFP LRLKRPWQPG 360 LPFPQVFDNR GDESAALMWF GEVAREQGLP LMNFQSGMGP WIQRVEPTMV GNELDLYQSV 420 SAAALQDRSG DLKKQQLLQY QQPFQFHFQP CKSTSLLEQQ FIQQTLPQKI FSPQLHVSEN 480 QNDMLLQLHN EQQKQQPQAF EQVFQNPTED MPHQQTPLVS QLQQTLGFPD LSTDYLTVTT 540 PSCLQSLISS SCSEGSANVI NPSRLRAPMT QHNQQIWEPK IGIYEATLVN SAFSSYPDKG 600 RSLETEKCSA GSHNDTAFGV SIDSHNLHPN AALNLTTSSF VSDLPAEPYL ASCFQNSLYG 660 IPDKTSSLLQ NSGEVDPPSK TFVKVYKAGS VGRSLDISRF SSYNELREEL AQMFGVEGKI 720 EDPLRSGWQL VFVDRENDVL LLGDGPWEAF VNSVWYIKIL SPEDVQRMG

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MLELGTMARL CWATGLLADC GDSRYLLSSG AQRAASTNKE VEGHIPNYPS LPPQLMCQLH  60
NVTMHADPET DDVYAQMTLQ PLSPEEQKNS YVPIEMGVAS KQPMNYFCKT LTASDTSTHG  120
GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV  180
SAKRLVAGDS VLFIWNEKNQ LLLGIQRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN  240
SRFTIFYNPR ACPSEFVIPL SKYVKAVFHT RVSIGMRFRM LFETEESSVR RYMGTITGTS  300
DLDPLRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSVFP LRLKRPWQPG  360
LPFPQVFDNR GDESAALMWF GEVAREQGLP LMNFQSGMGP WIQRVEPTMV GNELDLYQSV  420
SAAALQDRSG DLKKQQLLQY QQPFQFHFQP CKSTSLLEQQ FIQQTLPQKI FSPQLHVSEN  480
QNDMLLQLHN EQQKQQPQAF EQVFQNPTED MPHQQTPLVS QLQQTLGFPD LSTDYLTVTT  540
PSCLQSLISS SCSEGSANVI NPSRLRAPMT QHNQQIWEPK IGIYEATLVN SAFSSYPDKG  600
RSLETEKCSA GSHNDTAFGV SIDSHNLHPN AALNLTTSSF VSDLPAEPYL ASCFQNSLYG  660
IPDKTSSLLQ NSGEVDPPSK TFVKVYKAGS VGRSLDISRF SSYNELREEL AQMFGVEGKI  720
EDPLRSGWQL VFVDRENDVL LLGDGPWEAF VNSVWYIKIL SPEDVQRMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	0.0	ARF family protein