PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556281.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TALE

Protein Properties

Length: 613aa MW: 67692.8 Da PI: 5.6389

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.2	3.1e-09	404	441	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + XP_028556281.1 404 FEHflHPYPNDSEKLMLARQTGLTRSQISNWFINARVR 441 665559******************************88 PP
2	BELL	107.9	6.3e-35	267	338	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akLl +l+eVd+++kqy +++q+v +sF+a+ag g+akpYt+lAl++iSrhFr+L+dai +qi XP_028556281.1 267 EKQELQNKLAKLLAMLDEVDRKFKQYFNEMQIVDASFDAIAGSGAAKPYTALALQTISRHFRSLRDAIDSQI 338 689******************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MATFYSNSSN QRDAMENIYL RDPAGSEPAV SGNMVHLNFP SVSSYSNTLA GTREKQANCI 60 GDNAYSSWRD GRNVMLFMQA HGRSLDGGDE LIRNSASDVD PQLGLQTPLG ILNEHNLSLQ 120 QSMSSGQGQG LSLSLGTQIP VPSFKYQPAS SVVSGLSSYH SNSGNGETYG NENSRSRILN 180 ANASPYGFTN TMSTVPNSKY IKAAQQLLDE FVNIQRALKK KADNTKSISA SGFPASKDNK 240 GASRSDGNPS EHQESSANSP SELSTSEKQE LQNKLAKLLA MLDEVDRKFK QYFNEMQIVD 300 ASFDAIAGSG AAKPYTALAL QTISRHFRSL RDAIDSQIRS SQKILGEQDG LSGKGCGISR 360 LRYIDQHMRQ QKTIQQLGVM PQHAWRPQRG LPENSVSILR AWLFEHFLHP YPNDSEKLML 420 ARQTGLTRSQ ISNWFINARV RLWKPMVEDI YKEEFGENEM DSNSSSENAT KYIDELCNNA 480 QEDQQSPSNE RCQTNPSNQL NLISETNTAA RVPSFQNEPM DQRPHDSSNI NPLLHDTICN 540 AEGSSRLMTY TMNELARYDN GGVSLTLGLQ HCDDNLPASD VQEEFLASRG EDVYSSAPSI 600 GFGPSQLLNY FVA

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MATFYSNSSN QRDAMENIYL RDPAGSEPAV SGNMVHLNFP SVSSYSNTLA GTREKQANCI  60
GDNAYSSWRD GRNVMLFMQA HGRSLDGGDE LIRNSASDVD PQLGLQTPLG ILNEHNLSLQ  120
QSMSSGQGQG LSLSLGTQIP VPSFKYQPAS SVVSGLSSYH SNSGNGETYG NENSRSRILN  180
ANASPYGFTN TMSTVPNSKY IKAAQQLLDE FVNIQRALKK KADNTKSISA SGFPASKDNK  240
GASRSDGNPS EHQESSANSP SELSTSEKQE LQNKLAKLLA MLDEVDRKFK QYFNEMQIVD  300
ASFDAIAGSG AAKPYTALAL QTISRHFRSL RDAIDSQIRS SQKILGEQDG LSGKGCGISR  360
LRYIDQHMRQ QKTIQQLGVM PQHAWRPQRG LPENSVSILR AWLFEHFLHP YPNDSEKLML  420
ARQTGLTRSQ ISNWFINARV RLWKPMVEDI YKEEFGENEM DSNSSSENAT KYIDELCNNA  480
QEDQQSPSNE RCQTNPSNQL NLISETNTAA RVPSFQNEPM DQRPHDSSNI NPLLHDTICN  540
AEGSSRLMTY TMNELARYDN GGVSLTLGLQ HCDDNLPASD VQEEFLASRG EDVYSSAPSI  600
GFGPSQLLNY FVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-117	TALE family protein