PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556271.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 472aa MW: 51693.5 Da PI: 8.4499

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556271.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.5	2.8e-33	191	249	1	60
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d++v+ei+Y+g+Hnh+k XP_028556271.1 191 VDDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCPVKKKVERSV-DGQVTEIIYKGKHNHQK 249 59**************************************.*************85 PP
2	WRKY	105.8	2.2e-33	364	422	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++dpk+v++tYeg+Hnh+ XP_028556271.1 364 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNAGCSVRKHVERASKDPKAVITTYEGKHNHD 422 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MAENIRTEAT GHTEAKRPSI SLPPRPSDES LFRLEPAELL AGAITLPETR TTAEAATGEG 60 RGRGGGLNLG QSQAMNLLAG QSPFFMAQSD LSPGGLLDFP AIFSSNLMQG QLGLAHQQAS 120 HSQLQMHLQS ENPSSLFSAS LSRSFPTVKM PKVLHMPATT LDSNAYCSEV ASASHSDQVP 180 FPVPIVVDKP VDDGYNWRKY GQKQVKGSEY PRSYYKCTQP NCPVKKKVER SVDGQVTEII 240 YKGKHNHQKP PSNKRGKEAN MPNGSAELNG HIGFLTNSES HSQGNAITGL SKRDRESGNV 300 AYDQLSGSSD GEEVGDHEGM DERDYGESDQ KKRNLETKLI ESASHRTVTE ARIIVQTTSE 360 VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC TNAGCSVRKH VERASKDPKA VITTYEGKHN 420 HDVPAARNSS HSTAAAASNS SKPQNIHGRS DPLNNVHRPI AVFQLKEERE IM

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MAENIRTEAT GHTEAKRPSI SLPPRPSDES LFRLEPAELL AGAITLPETR TTAEAATGEG  60
RGRGGGLNLG QSQAMNLLAG QSPFFMAQSD LSPGGLLDFP AIFSSNLMQG QLGLAHQQAS  120
HSQLQMHLQS ENPSSLFSAS LSRSFPTVKM PKVLHMPATT LDSNAYCSEV ASASHSDQVP  180
FPVPIVVDKP VDDGYNWRKY GQKQVKGSEY PRSYYKCTQP NCPVKKKVER SVDGQVTEII  240
YKGKHNHQKP PSNKRGKEAN MPNGSAELNG HIGFLTNSES HSQGNAITGL SKRDRESGNV  300
AYDQLSGSSD GEEVGDHEGM DERDYGESDQ KKRNLETKLI ESASHRTVTE ARIIVQTTSE  360
VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC TNAGCSVRKH VERASKDPKA VITTYEGKHN  420
HDVPAARNSS HSTAAAASNS SKPQNIHGRS DPLNNVHRPI AVFQLKEERE IM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-106	WRKY family protein