PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028556185.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 394aa    MW: 44460.5 Da    PI: 8.9137
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028556185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.36e-14320345126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ ++++G+C+yG+ C+FaHg
  XP_028556185.1 320 FKTELCNKWQKNGECPYGEHCQFAHG 345
                     79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MNIAMSKHAV KARYYVSMVL QGQKIQLRQI LQNSPLTQSN TKMQHELVSS ANVDGIAASS  60
VSPMLFVPPD LRIPSPPYLT TVRDLTRLSP QISSPMVSQY ALSPPIQCSG KTPITHSSSP  120
VSFEDEDPVA IENRLYLSGL ALQYQQITDR YAFCISQLQD AKREAENISK KNNELRRAND  180
ELYQRLSLNS AKHKYRNPMT SNYPPMSLLD DHFRRLSLTE QPDEASPTSV FAFQDNRHGG  240
KFPAVDDMRL TLPKCISIRS TGYLKIHPTG GSSSESNRSI RHRPTTPVMQ QKVCLGGAEN  300
KDGGEAEDAV ELDVYNQGMF KTELCNKWQK NGECPYGEHC QFAHGIGEMR PVIRHPRYKT  360
ELCRMILAGD TCPYGHRCHF RHSISPSDHR LRRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.26e-56C3H family protein