PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556137.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 637aa MW: 70971.5 Da PI: 6.5648

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556137.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	110	134	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a++G C++G++C+F+H+ XP_028556137.1 110 ICSEVAKSGkadGCRFGENCRFNHD 134 5999999999999***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MDIIPLAESN ETASPDDGFD PLEKPYQSPP KLPVELRTPE DLIAKAIAPV KIDYLRPPPS 60 RTALTAKVEG GADNDATEWK TTTSGVIKEK KSKRQLKRER KQEQKSALHI CSEVAKSGKA 120 DGCRFGENCR FNHDIAAFLA QKPADLEGVC PFVTFEELCP YGITCRFFNT HKEHTPESCD 180 ISKKSSEINV LKKDLQKLLW KNKFSFPMAD YQLKVLGLKG GKSTNSKAGN GQLDNNPENS 240 DVLNDLHADE VDDTCISADE IRRSPCEAAE KELSSVVSGF DESRPLKKVK SLVDGHVKDN 300 WSSEATYVGT SEQRNDLPET NLLDGRDGAS SIRLCSSISD LNLKPHAREK KLIDFSRKLY 360 LAPLTTVGNL PFRRICKTLG ADITCGEMAL CTNLLQGQAS EWALLRRHSS EDIFGVQICG 420 AYPDSVARTV ELIDQHCEVD FIDINMGCPI DIIVNKGAGS SLLTKPMRMK SIIQAASGTT 480 VVPLTIKVRT GFFEGRNRID SLISNIYDWG AGAITVHGRS RQQRYSKLSD WNYIYQCTNK 540 APADLQVLGN GDIFSYCDYN KHMSDCPELS TCMIARGALI KPWIFTEIKE QRHWDISSSE 600 RLNIIRDFVN FGLEHWGSDT KDSNFSVQVL KQPDIFC

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MDIIPLAESN ETASPDDGFD PLEKPYQSPP KLPVELRTPE DLIAKAIAPV KIDYLRPPPS  60
RTALTAKVEG GADNDATEWK TTTSGVIKEK KSKRQLKRER KQEQKSALHI CSEVAKSGKA  120
DGCRFGENCR FNHDIAAFLA QKPADLEGVC PFVTFEELCP YGITCRFFNT HKEHTPESCD  180
ISKKSSEINV LKKDLQKLLW KNKFSFPMAD YQLKVLGLKG GKSTNSKAGN GQLDNNPENS  240
DVLNDLHADE VDDTCISADE IRRSPCEAAE KELSSVVSGF DESRPLKKVK SLVDGHVKDN  300
WSSEATYVGT SEQRNDLPET NLLDGRDGAS SIRLCSSISD LNLKPHAREK KLIDFSRKLY  360
LAPLTTVGNL PFRRICKTLG ADITCGEMAL CTNLLQGQAS EWALLRRHSS EDIFGVQICG  420
AYPDSVARTV ELIDQHCEVD FIDINMGCPI DIIVNKGAGS SLLTKPMRMK SIIQAASGTT  480
VVPLTIKVRT GFFEGRNRID SLISNIYDWG AGAITVHGRS RQQRYSKLSD WNYIYQCTNK  540
APADLQVLGN GDIFSYCDYN KHMSDCPELS TCMIARGALI KPWIFTEIKE QRHWDISSSE  600
RLNIIRDFVN FGLEHWGSDT KDSNFSVQVL KQPDIFC