PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028556135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 710aa MW: 79372 Da PI: 6.5097 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 4e-06 | 110 | 134 | 5 | 26 |
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a++G C++G++C+F+H+ XP_028556135.1 110 ICSEVAKSGkadGCRFGENCRFNHD 134 5999999999999***********6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence |
MDIIPLAESN ETASPDDGFD PLEKPYQSPP KLPVELRTPE DLIAKAIAPV KIDYLRPPPS 60 RTALTAKVEG GADNDATEWK TTTSGVIKEK KSKRQLKRER KQEQKSALHI CSEVAKSGKA 120 DGCRFGENCR FNHDIAAFLA QKPADLEGVC PFVTFEELCP YGITCRFFNT HKEHTPESCD 180 ISKKSSEINV LKKDLQKLLW KNKFSFPMAD YQLKVLGLKG GKSTNSKAGN GQLDNNPENS 240 DVLNDLHADE VDDTCISADE IRRSPCEAAE KELSSVVSGF DESRPLKKVK SLVDGHVKDN 300 WSSEATYVGT SEQRNDLPET NLLDGRDGAS SIRLCSSISD LNLKPHAREK KLIDFSRKLY 360 LAPLTTVGNL PFRRICKTLG ADITCGEMAL CTNLLQGQAS EWALLRRHSS EDIFGVQICG 420 AYPDSVARTV ELIDQHCEVD FIDINMGCPI DIIVNKGAGS SLLTKPMRMK SIIQAASGTT 480 VVPLTIKVRT GFFEGRNRID SLISNIYDWG AGAITVHGRS RQQRYSKLSD WNYIYQCTNK 540 APADLQVLGN GDIFSYCDYN KHMSDCPELS TCMIARGALI KPWIFTEIKE QRHWDISSSE 600 RLNIIRDFVN FGLEHWGSDT KGVETTRHFL LEWLSYTHRY IPVGILDVIP QRLNWRPPSY 660 FGRDDLETLM ASDSAADWIR ISEMLLGKVP ESFTFAPKHK SNAYDTAENG |