PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028555976.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARR-B
Protein Properties Length: 688aa    MW: 75050.8 Da    PI: 6.7493
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028555976.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.41.4e-27226279155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+q  G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  XP_028555976.1 226 KPRVVWSVELHQQFVNAVNQV-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 279
                     79*******************.********************************8 PP
2Myb_DNA-binding38.52.7e-12228278148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v+av+q G +   +k+I + m+  g+t++++ s++qk++
   XP_028555976.1 228 RVVWSVELHQQFVNAVNQVGIDkaVPKRILELMNvPGLTRENVASHLQKFR 278
                      678**********************************************97 PP
3Response_reg73.77.1e-25411491109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l+ +l+k +y +v +++++  al ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++a g  + + + +k G
  XP_028555976.1  41 VLVVDDDVTCLKILEHMLRKCRY-HVITCSQAMIALSLLRERKgcFDVVISDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIKHG 133
                     89*********************.****************************************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_028555976.1 134 ACDYLIKPVRMEELKN 149
                     *************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    
MEAMQKLAAP NASAGSNYGS GLAIVTVAGA APEQFPAGLR VLVVDDDVTC LKILEHMLRK  60
CRYHVITCSQ AMIALSLLRE RKGCFDVVIS DVHMPDMDGF KLLELVGLEM DLPVIMMSAD  120
GRTSAVMRGI KHGACDYLIK PVRMEELKNV WQHVVRKKWN ESKDVENSSS FEDSDRQGRV  180
ADESEYASSM NEGTDASWKT QKKKRDSKDE EDDIELDNED PSASKKPRVV WSVELHQQFV  240
NAVNQVGIDK AVPKRILELM NVPGLTRENV ASHLQKFRLY LKRISGVTQH QAALPSLFCN  300
QVDAKTKCGS LGSLDFHSLA ASGQIPQQTL AALHAELLCH PSNNIVFPAV DQPVLLQASN  360
QGSKFLPLEK EVAFGQPLFK CQSGMQKQLP PSEITVHGMS PGFSSWSSNQ LGVTGSNNKH  420
AGLSNIQNNS LLMQMLQHQQ QQEHHQESFH YMVSDSNNAI NVQPSCLVVS SQSPSGITVG  480
CNSGPINQKS LVLSPQPSSN IQLGNNSLLA SSNSTSNSSN SRLNNPPLGM PPAANGDFKD  540
IGMLSTYYPT SSLSSSSVCT SSAAGWRPQN NMKISSINQR ADQLPKLYIQ GSEQIAGASV  600
NQGQFRNLGF VGKGTCIPSR FAVDDLESPT NDKGFTKTST FDDVEKVKQE LNLDFLDGTK  660
KVGNAMLPNF PSTDFLGSLS NDSQFLKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-112ARR-B family protein