PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555744.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CO-like

Protein Properties

Length: 419aa MW: 46136.3 Da PI: 6.1842

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18	6.1e-06	5	44	6	39
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++ ++ +C+++ lC C + H+ H++ XP_028555744.1 5 CDFCGGQRPMVYCRSDAASLCLACDRNVHSAnalsrrHSR 44 *****************************65677777766 PP
2	zf-B_box	23	1.6e-07	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++++ C + + lC++C ++H + H++++ XP_028555744.1 46 LLCDRCYSQPASIRCIEESISLCQSCDWNGHGNstsssgHKRQT 89 57*****************************5588999999876 PP
3	CCT	65.6	1.4e-22	363	406	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k R FeKkirY+sRK++A+sR RvKGrFvk+ XP_028555744.1 363 RDNAVMRYKEKKKARMFEKKIRYASRKTRADSRRRVKGRFVKAG 406 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MGCLCDFCGG QRPMVYCRSD AASLCLACDR NVHSANALSR RHSRTLLCDR CYSQPASIRC 60 IEESISLCQS CDWNGHGNST SSSGHKRQTI RCYSGCPSAT ELARIWPFVL EFLPVEDSSC 120 EQGIMGLLSI NENSTSTHWG PPQQSSTSDM ADICRMNDVE KVNTTNVHIA SSSMGTAIPM 180 LCKTDQPADS IDSTTPKSSD GRTKKVANSE DDFYDGFAVD DELTFENYEE LFGASHAHSE 240 HLFDDVGIDS IFEKKENSAA NSNCQGEFVA EASSAVQVKS IQVKSSYDIS VDSVMPNQGA 300 KIDYNMSIST KQARSSLSRT FSSLTGESSA SDYQDCGMSS MLLVGEPPYH PTSSDISIQA 360 INRDNAVMRY KEKKKARMFE KKIRYASRKT RADSRRRVKG RFVKAGEAFD YDPLSQARA

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MGCLCDFCGG QRPMVYCRSD AASLCLACDR NVHSANALSR RHSRTLLCDR CYSQPASIRC  60
IEESISLCQS CDWNGHGNST SSSGHKRQTI RCYSGCPSAT ELARIWPFVL EFLPVEDSSC  120
EQGIMGLLSI NENSTSTHWG PPQQSSTSDM ADICRMNDVE KVNTTNVHIA SSSMGTAIPM  180
LCKTDQPADS IDSTTPKSSD GRTKKVANSE DDFYDGFAVD DELTFENYEE LFGASHAHSE  240
HLFDDVGIDS IFEKKENSAA NSNCQGEFVA EASSAVQVKS IQVKSSYDIS VDSVMPNQGA  300
KIDYNMSIST KQARSSLSRT FSSLTGESSA SDYQDCGMSS MLLVGEPPYH PTSSDISIQA  360
INRDNAVMRY KEKKKARMFE KKIRYASRKT RADSRRRVKG RFVKAGEAFD YDPLSQARA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-100	CO-like family protein