PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555558.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 361aa MW: 40955.3 Da PI: 8.6019

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.5	1e-31	112	168	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+pr+YYrCt++ Cpvkk vers+ d+++ ei+Y+g+Hnh+k XP_028555558.1 112 DGYNWRKYGQKQVKGSEYPRGYYRCTHPFCPVKKMVERSK-DGEISEIVYRGDHNHPK 168 9*************************************.*************85 PP
2	WRKY	90.7	1.2e-28	305	361	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK+vkg+ +pr+YYrCt ++C+++k ver+++d +++tYeg+H+h XP_028555558.1 305 DDGYQWRKYGQKVVKGNSYPRNYYRCTNQNCSARKYVERASDDHGSFITTYEGDHKH 361 8*******************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MALDMESIDI SKENSKTIIL YRPIAQVVPS SVLLKKLENH EEHKQTLLDV HFQPQELNQV 60 NCSQSTMSLH QSLTSSSNAN NFLCSSNSSH ESKKTKVKSQ QITKNGDRNS LDGYNWRKYG 120 QKQVKGSEYP RGYYRCTHPF CPVKKMVERS KDGEISEIVY RGDHNHPKSQ KKEQISSSRL 180 REQTSVLDGN GGNFMDDRAF TDFLLEENLL ENKTENCDVE DFLDTGINRK ALYSDDSDTV 240 LHALSLSFGA DLNGGKAAAF STRDGYEKKS QKRKNGENTN ESSVAAHKTS TPKVVAAVNH 300 KHTTDDGYQW RKYGQKVVKG NSYPRNYYRC TNQNCSARKY VERASDDHGS FITTYEGDHK 360 H

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MALDMESIDI SKENSKTIIL YRPIAQVVPS SVLLKKLENH EEHKQTLLDV HFQPQELNQV  60
NCSQSTMSLH QSLTSSSNAN NFLCSSNSSH ESKKTKVKSQ QITKNGDRNS LDGYNWRKYG  120
QKQVKGSEYP RGYYRCTHPF CPVKKMVERS KDGEISEIVY RGDHNHPKSQ KKEQISSSRL  180
REQTSVLDGN GGNFMDDRAF TDFLLEENLL ENKTENCDVE DFLDTGINRK ALYSDDSDTV  240
LHALSLSFGA DLNGGKAAAF STRDGYEKKS QKRKNGENTN ESSVAAHKTS TPKVVAAVNH  300
KHTTDDGYQW RKYGQKVVKG NSYPRNYYRC TNQNCSARKY VERASDDHGS FITTYEGDHK  360
H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.2	5e-60	WRKY family protein