PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555169.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 492aa MW: 55375.8 Da PI: 9.0202

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555169.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	378	426	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lv++v ++G g+W+ I + +Rt ++k++w+++l XP_028555169.1 378 AWTLGEVLKLVEGVSRYGAGRWSQIRQVAFasgSHRTSVDLKDKWRNLL 426 7**********************99998999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MVDGDGRLIP ATDDELIEVK HFVEEDGTRQ SENEVDTKKV MFKMDVDGPS FGQPNISDTL 60 AKNQSTEACS EIRKNAVNEA AEGSFSKKFS SLKPDFSLLE GEICLDNFSI RELQEAFRAT 120 FGRYTSVKDK LWLKRRIAMG LTNSCNIPSA NFIIKDNKIV LCNVQEETTS RTQRNMSYPG 180 YIMMNNSTDP LNETLQRTLN DTSSGIVEQK ASFTKALDKS LEKCNVENLN TQMEQCGAKR 240 IRRPTKRYIE EHTEVEVMAY SGRVASLGKT AMHDQHCLKS KVRTPCLVDT SQDLLGGYDA 300 RIPSVLRVRR RPPRKNFLTL VNFVHTEREK MNPEVLNSEQ SPHQKHEKFI SSVGAAFHEK 360 SDTVHPVEAS VKRKHHRAWT LGEVLKLVEG VSRYGAGRWS QIRQVAFASG SHRTSVDLKD 420 KWRNLLKASF AQVPTDKGIG NSRKPASLPI PTPILLRVRE LADKRSDSEI EFGSSQFVGH 480 GGIVQEKETG FL

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MVDGDGRLIP ATDDELIEVK HFVEEDGTRQ SENEVDTKKV MFKMDVDGPS FGQPNISDTL  60
AKNQSTEACS EIRKNAVNEA AEGSFSKKFS SLKPDFSLLE GEICLDNFSI RELQEAFRAT  120
FGRYTSVKDK LWLKRRIAMG LTNSCNIPSA NFIIKDNKIV LCNVQEETTS RTQRNMSYPG  180
YIMMNNSTDP LNETLQRTLN DTSSGIVEQK ASFTKALDKS LEKCNVENLN TQMEQCGAKR  240
IRRPTKRYIE EHTEVEVMAY SGRVASLGKT AMHDQHCLKS KVRTPCLVDT SQDLLGGYDA  300
RIPSVLRVRR RPPRKNFLTL VNFVHTEREK MNPEVLNSEQ SPHQKHEKFI SSVGAAFHEK  360
SDTVHPVEAS VKRKHHRAWT LGEVLKLVEG VSRYGAGRWS QIRQVAFASG SHRTSVDLKD  420
KWRNLLKASF AQVPTDKGIG NSRKPASLPI PTPILLRVRE LADKRSDSEI EFGSSQFVGH  480
GGIVQEKETG FL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	1e-55	MYB_related family protein