PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028555167.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB_related | ||||||||
Protein Properties | Length: 516aa MW: 57564 Da PI: 7.5861 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 402 | 450 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lv++v ++G g+W+ I + +Rt ++k++w+++l XP_028555167.1 402 AWTLGEVLKLVEGVSRYGAGRWSQIRQVAFasgSHRTSVDLKDKWRNLL 450 7************************99998999**************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence |
MGALVDEDGV GRRSTENGEP DGIVASNPVV YQLVRVDGDG RLIPATDDEL IEVKHFVEED 60 GIISGTRQSE NEVDTKKVMF KMDVDGPSFG QPNISDTLAK NQSTEACSEI RKNAVNEAAE 120 GSFSKKFSSL KPDFSLLEGE ICLDNFSIRE LQEAFRATFG RYTSVKDKLW LKRRIAMGLT 180 NSCNIPSANF IIKDNKIVLC NVQEETTSRT QRNMSYPGYI MMNNSTDPLN ETLQRTLNDT 240 SSGIVEQKAS FTKALDKSLE KCNVENLNTQ MEQCGAKRIR RPTKRYIEEH TEVEVMAYSG 300 RVASLGKTAM HDQHCLKSKV RTPCLVDTSQ DLLGGYDARI PSVLRNFVHT EREKMNPEVL 360 NSEQSPHQKH EKFISSVGAA FHEKSDTVHP VEASVKRKHH RAWTLGEVLK LVEGVSRYGA 420 GRWSQIRQVA FASGSHRTSV DLKDKWRNLL KASFAQVPTD KGIGNSRKPA SLPIPTPILL 480 RVRELADKRS DSEIEFGSSQ FVGHGGIVQE KETGFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.1 | 2e-55 | MYB_related family protein |