PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555066.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TALE

Protein Properties

Length: 401aa MW: 44578.9 Da PI: 5.5794

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.8	1.5e-07	327	360	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + XP_028555066.1 327 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 360 569*****************************87 PP
2	ELK	29	2.4e-10	281	302	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_028555066.1 281 ELKHELKNGYKEKIVDIREEIL 302 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MAYHNHLTQE ITLPAYADQH LVEDAGKSPT VAAAATARHL AGGPSWLNNP ILRQPHQFVD 60 GSFLHLQTAP APFRSADDEV PASSDSIIVA TAGDEETPAG SGEAVEGTWQ RARYKAEILA 120 HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQQVVAK YSVMAGGQML AGEEKELDQF 180 MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WELEQSLQSL TGVSPGEGTG ATMSDDDDDD 240 DQADGETNFY DGSFDGSDSM GFGPLVPTES ERSLMERVRQ ELKHELKNGY KEKIVDIREE 300 ILRKRRAGKL PGDTTSTLKA WWQSHAKWPY PTEDDKARLV QETGLQLKQI NNWFINQRKR 360 NWHSNPSSST ALKSKRKRIA GDRNLKGLEG TQGKLLNWSE I

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MAYHNHLTQE ITLPAYADQH LVEDAGKSPT VAAAATARHL AGGPSWLNNP ILRQPHQFVD  60
GSFLHLQTAP APFRSADDEV PASSDSIIVA TAGDEETPAG SGEAVEGTWQ RARYKAEILA  120
HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQQVVAK YSVMAGGQML AGEEKELDQF  180
MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WELEQSLQSL TGVSPGEGTG ATMSDDDDDD  240
DQADGETNFY DGSFDGSDSM GFGPLVPTES ERSLMERVRQ ELKHELKNGY KEKIVDIREE  300
ILRKRRAGKL PGDTTSTLKA WWQSHAKWPY PTEDDKARLV QETGLQLKQI NNWFINQRKR  360
NWHSNPSSST ALKSKRKRIA GDRNLKGLEG TQGKLLNWSE I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	378	RKRNWHSNPSSSTALKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-164	TALE family protein