PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554898.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TALE

Protein Properties

Length: 445aa MW: 50271.6 Da PI: 6.4635

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	1e-08	383	420	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 F+ ++yps +e+ LA+++gL+ +q+++WF N R + XP_028554898.1 383 FNHflHPYPSDNEKLLLASQTGLKRNQISNWFINARVR 420 554458******************************88 PP
2	BELL	61.9	1.5e-20	263	317	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++++ +qy +q+++++ sFea+ag g+a+ Yt+l +ka+S+hF +Lkd i+ +i XP_028554898.1 263 QLERHQQQYFHQMHALVDSFEAIAGTGAAAAYTTLTMKAMSKHFSNLKDTITTHI 317 6788889********************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MASYSSQPQE LCHCLQCDKK IQNDFLQSWM NEEAGKQESF LGLVHGHGNG NSLSLSLGSH 60 MESMNSYNYK KTHTLSNDIS SNSLVHEDVM VESSSSCAEH AKHECMTCDG DAASSGCGSR 120 SSDANYYDSI SIVSFVQNSR YLKPAQLLLD EVVFVNKNSD IELSSEEKMD RTDAVDVLSC 180 GRPQFTGEEM DSKKGNMKFL CLTKEKQDIE TRITKLVALL EEVFTSIRLN GEWRFIMTIT 240 HSLGKTNVDD VIYLFISFSI FIQLERHQQQ YFHQMHALVD SFEAIAGTGA AAAYTTLTMK 300 AMSKHFSNLK DTITTHITSA SKALSKDLSR NNGAPSLYTH SHSNYKHKKE ALQSIGMVRI 360 QQVSRPLRGL PEDSVAVLRA WLFNHFLHPY PSDNEKLLLA SQTGLKRNQI SNWFINARVR 420 LWKPMIEEMY REEFTEDQQD SNPSP

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MASYSSQPQE LCHCLQCDKK IQNDFLQSWM NEEAGKQESF LGLVHGHGNG NSLSLSLGSH  60
MESMNSYNYK KTHTLSNDIS SNSLVHEDVM VESSSSCAEH AKHECMTCDG DAASSGCGSR  120
SSDANYYDSI SIVSFVQNSR YLKPAQLLLD EVVFVNKNSD IELSSEEKMD RTDAVDVLSC  180
GRPQFTGEEM DSKKGNMKFL CLTKEKQDIE TRITKLVALL EEVFTSIRLN GEWRFIMTIT  240
HSLGKTNVDD VIYLFISFSI FIQLERHQQQ YFHQMHALVD SFEAIAGTGA AAAYTTLTMK  300
AMSKHFSNLK DTITTHITSA SKALSKDLSR NNGAPSLYTH SHSNYKHKKE ALQSIGMVRI  360
QQVSRPLRGL PEDSVAVLRA WLFNHFLHPY PSDNEKLLLA SQTGLKRNQI SNWFINARVR  420
LWKPMIEEMY REEFTEDQQD SNPSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	3e-53	TALE family protein