PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028554869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 228aa MW: 25428.2 Da PI: 4.4313 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 38.4 | 2.7e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++aded+ +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ fdfl+d+v + XP_028554869.1 1 MQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTLNSLHLKQCVKMYGAFDFLTDVVNK 69 899***************************************************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence |
MQADEDIGKI ALAVPLLVSK ALELFLQDLC DRTYEVTLQR GAKTLNSLHL KQCVKMYGAF 60 DFLTDVVNKV PNLGGTESFG DEKGICRRRK TIEHDGDTTT DESRFAKVAM TSTNISPRGR 120 GRGRGRSRGR PPLNRNLERE SSLMKYEDEI DLSPEHEDPI TDSDATEKAK DNITDFTNPA 180 SILSTEANPG EYSAWPLPDE VVKLGIEPSN LANINLHLDE DEDYDNED |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 118 | 128 | RGRGRGRGRSR |
2 | 120 | 130 | RGRGRGRGRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-41 | NF-YC family protein |