PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028554841.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 263aa MW: 29077.4 Da PI: 8.5583 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.2 | 9.4e-23 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+ + rqv fskRrng++KKA+ELS+LC+ae+++++fs+ gk + + XP_028554841.1 16 KPIKKEEARQVCFSKRRNGLFKKASELSTLCGAEICIVVFSPAGKAFSF 64 6899999*************************************97766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence |
MMNKKRSIGR QKIEIKPIKK EEARQVCFSK RRNGLFKKAS ELSTLCGAEI CIVVFSPAGK 60 AFSFGHPSVA AVAHRFLADE PPLPSLCEPF VAAAAIKLNE DYAQLNAFLE KEKMRRAALD 120 EALTAPQLGA DKPFWRNGEV ESMGLEELEE LRGQLMQLRS AVAERANQLL AMQQAYQCLL 180 PQSSGNNSFG DKRLLLASPS GFENRFGYSV DGLTFCSFKT EMKPDIYVQL PSSSLQPFAS 240 ARYGVDHYGP PYYVAGPPYS PLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-25 | M-type_MADS family protein |