PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554646.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 981aa MW: 110218 Da PI: 5.1783

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	31	7.5e-10	42	125	50	128
NAM 50 kvkaeekewyfFskrdkkya..tgkrknr..atksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +++++ + yfF+++ + ++ + kr+++ + W++ gk++ v++ +g + g k++L +y + + ++ kt W+mh+y + XP_028554646.1 42 NFYQDGSASYFFHRKIEMHRsrNFKRQKKqdNSVEICWNSIGKSNLVCV-DGIHQGSKEVLSLYMNtvTGGNPLKTPWLMHQYCI 125 455667789***99887733233444412344677****9999.999*******6522555566*******75 PP

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence
MKSFSGTCLQ KWEKEWLNDI LLLMNLSFHL MKMLGWAMFF LNFYQDGSAS YFFHRKIEMH 60 RSRNFKRQKK QDNSVEICWN SIGKSNLVCV DGIHQGSKEV LSLYMNTVTG GNPLKTPWLM 120 HQYCIGINET EEDLVVSKIF YEISSNQDIQ DSRTDSVHGL VAAVVGVADS LQVAPEFHER 180 LHADSVSADA SSQAVELGIG GETNIKVVDY LKSASCQKPP IKYLEKAKTN LDKNSDGTLA 240 TDELALLESA CETAAEISIF CTSAKSEIRD EDQECVVEKR ADDFQSNLGD CGNWINNYNY 300 NEVIDDTCDS NDTQVSMEKS CPKIVPEHDL QKNISDKMFR TQGRFIPTKS REFNTTGIYS 360 FAGHISRERH ETYSKCLDEA HVSPNSIPSA EHNITHENSI NSLFILGLPA YSLKGKPSKE 420 TEPIISFENN SNNWVNISAQ SALPIKIEPK SFVDTEIDIA SEKFSSNRLN VSAPSVMIIK 480 VKNEPFEEVE ASNVLEKYVE KHSSFSQLSC PEEGAPSCNL SHLTYVPKDP RIPSAEILNT 540 MISGLDKLLS ETTGLMNHHH EEDDNVHDGL LMSNDNSQVI GDTECFNQSS YAQINVHTGE 600 PQSNSVSTSS SLNVKSEPVE SSLLSCSQIP PCNTRGHVLL TFENKKELCS DFQPDVLDHV 660 PLKLRLGISV SEDDVNVKNG NISEEIAPVT PACRSFGSVN TKECLSSSRR KRKRKKIATD 720 SVEKAMEEDA PGLLKVLLDR GIQVEEIKLY GDLEDNDPLE TSSSEGGFEE LETVMTKLFS 780 ERSSLLRFAS GRPVKGARAV YCLAGLISLI EQARYLRFRQ IPIDWGWCRP LQSFIFVFQT 840 HNRIVLERPE YGYATYFFEL VDSLPIDWQI RRLVMAMKLT NFSRTILLEN KPLIVGEDLS 900 EGEALVLEAY GWARNTGFGT LLNYRDRVVH DRRNVILSEW RAKIGKLLMN GYTGGRMVLA 960 NFPKKVVEYL GNLSSEIKME L

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence

MKSFSGTCLQ KWEKEWLNDI LLLMNLSFHL MKMLGWAMFF LNFYQDGSAS YFFHRKIEMH  60
RSRNFKRQKK QDNSVEICWN SIGKSNLVCV DGIHQGSKEV LSLYMNTVTG GNPLKTPWLM  120
HQYCIGINET EEDLVVSKIF YEISSNQDIQ DSRTDSVHGL VAAVVGVADS LQVAPEFHER  180
LHADSVSADA SSQAVELGIG GETNIKVVDY LKSASCQKPP IKYLEKAKTN LDKNSDGTLA  240
TDELALLESA CETAAEISIF CTSAKSEIRD EDQECVVEKR ADDFQSNLGD CGNWINNYNY  300
NEVIDDTCDS NDTQVSMEKS CPKIVPEHDL QKNISDKMFR TQGRFIPTKS REFNTTGIYS  360
FAGHISRERH ETYSKCLDEA HVSPNSIPSA EHNITHENSI NSLFILGLPA YSLKGKPSKE  420
TEPIISFENN SNNWVNISAQ SALPIKIEPK SFVDTEIDIA SEKFSSNRLN VSAPSVMIIK  480
VKNEPFEEVE ASNVLEKYVE KHSSFSQLSC PEEGAPSCNL SHLTYVPKDP RIPSAEILNT  540
MISGLDKLLS ETTGLMNHHH EEDDNVHDGL LMSNDNSQVI GDTECFNQSS YAQINVHTGE  600
PQSNSVSTSS SLNVKSEPVE SSLLSCSQIP PCNTRGHVLL TFENKKELCS DFQPDVLDHV  660
PLKLRLGISV SEDDVNVKNG NISEEIAPVT PACRSFGSVN TKECLSSSRR KRKRKKIATD  720
SVEKAMEEDA PGLLKVLLDR GIQVEEIKLY GDLEDNDPLE TSSSEGGFEE LETVMTKLFS  780
ERSSLLRFAS GRPVKGARAV YCLAGLISLI EQARYLRFRQ IPIDWGWCRP LQSFIFVFQT  840
HNRIVLERPE YGYATYFFEL VDSLPIDWQI RRLVMAMKLT NFSRTILLEN KPLIVGEDLS  900
EGEALVLEAY GWARNTGFGT LLNYRDRVVH DRRNVILSEW RAKIGKLLMN GYTGGRMVLA  960
NFPKKVVEYL GNLSSEIKME L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	709	714	RRKRKR
2	709	715	RRKRKRK
3	710	715	RKRKRK
4	710	716	RRKRKRK
5	712	716	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	3e-18	NAC family protein