PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028554579.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YA
Protein Properties Length: 330aa    MW: 36448.1 Da    PI: 9.7276
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028554579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.11.3e-32166222158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+  ksrkpylheSRh hA+rR+Rg+gGrF
  XP_028554579.1 166 EEPVYVNAKQYHGILRRRQSRAKAELEKKT-VKSRKPYLHESRHLHAMRRARGCGGRF 222
                     69***************************9.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MAEKGWKGTI IGYLAGSPCK NLHLELKSME IRPNGGNSGE YNSHGNLSPV FTSQLWWQGG  60
DSNIGQLKQK DSSSGKSDAT KDIPNGNSPQ EQQQMQPISA LLPPMMPEYI MPHTQLELGQ  120
SVACAAYSFS DPYHGMMAAY VPQALVHPQF LGMPHARMPL PLEMAEEPVY VNAKQYHGIL  180
RRRQSRAKAE LEKKTVKSRK PYLHESRHLH AMRRARGCGG RFLNTKKNEA DSSNSNPETG  240
LASASVSFGY ESLLSDTSAN PDSARARPAL QSVLKPHKYT SNSDGYQHSS GFQLSPFHPK  300
QGERMDEGDF SGQRRADLMA NQPKKRALAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.23e-44NF-YA family protein