PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554525.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 330aa MW: 36765.5 Da PI: 6.6996

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+++k+ G g+W+ ++ g++R++k+c++rw +yl XP_028554525.1 14 KGPWTPEEDQKLVEYIKKNGHGSWRHLPKSAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.8	1.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +eE+ l+++++ lG++ W++Ia +++ gRt++++k++w+++l XP_028554525.1 67 RGKFEEEEERLIIHLHSVLGNK-WSSIATRLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGRYPCCDEV GVKKGPWTPE EDQKLVEYIK KNGHGSWRHL PKSAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF EEEEERLIIH LHSVLGNKWS SIATRLPGRT DNEIKNYWNT HLKKKLLLMG 120 IDPITHRPIT NLDLIANLPN LLSHTNIKNL SISCDQSLHQ LHTDAAQFAR IQIIQSLLHV 180 LSSPHPTYPA DILLQLMNNK LEGISQLVSA QAGLIPNDIE GLKQSSNVFD DQEIASKIMD 240 DISKQRDQLF SANADGAVVA AANYSFPSLV SSSPENASSV DHQKQIEQII SSNSSSAAAC 300 SSSSTPFDAW DGLHFSDQDA AELGWKDILE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-83	MYB family protein