PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554480.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 1166aa MW: 131267 Da PI: 4.7715

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_028554480.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.5	2e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_028554480.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1166 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHR RRKRKGIDYN AEIPFEKRPP PGFFDVSGEE KPAEQHKFPT 240 TIEELEGKRR VDIETQLRRQ DAARNKIQQR LDSPAAILQA NKLNDPAAVR KRSKLMLPPP 300 QISDQELEEI AKMGYASDLT SGNEELAEGS GATRALVADY SQTPRRGMTP LRTPQRTPAG 360 KVDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKREMQTPNP LATPLSSPGP 420 AGLTPRIGMT PSRDGPGGTP KFTPFRDDLH INEDVEMQDS AKLELRRQEE MRRNLRSGLT 480 NLPLPKNEYQ IVMQPIPEEN EEIEEKIEED MSDKIAKDKA REQARMEALM KKRSKVLQRE 540 LPRPPAASLE LIKNLLVKGD EDKSSFVPPT PFEQADEMIN KELLSLLEHD NAKYPLNEKS 600 DKVKVKGVKR AENGKSSNSI PEIEEFDEAE LSEANSLIKE EMKFLRVAMG HENESFDDFV 660 KARDACQEDL MFFPARNTYG LASVAGSSEK LAALQNEFEI VKKKMDDEAK KATRLEQKIK 720 VLTHGYQMRG EKLWSQIEAT FKLTGTASIE LECFQALQKQ ERAAASYRID NLIDEVNKQK 780 QLERTLQDRY RDLLVEEERI QRMLEEHKAR LQAEEEMAAR KRAEEETAAS IRAAEEEMAA 840 RKRAEEETAA SIRAAEEEMA ARKRAEEETA ASIRAAEDEM TARKPVEEEM AASICAAEDE 900 MAASICAAED EMAARKRAEE EMAASICAAE DEMAARNRAE DEMAASILAA EDEMAARKLA 960 EDEMAASIHA AEDKMTARKL AGEEMAARNH AAEDEMSARK QADEEEIAAG DLMSEVEETV 1020 QNHAIDAEAG ATKDASDAIN HIHKQLTPPS DEAPAEFEEP VEIPASNKNS VLNDDELQNP 1080 KAAEEATKHP TLNEKSTEDN LSQNQSEITN PDQNVEFISE LSVDRLPNKQ LEVEAVALSE 1140 SISDGEKKPE IDSDVKLPPV VSPNEL

Sequence ? help Back to Top

Protein Sequence Length: 1166 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHR RRKRKGIDYN AEIPFEKRPP PGFFDVSGEE KPAEQHKFPT  240
TIEELEGKRR VDIETQLRRQ DAARNKIQQR LDSPAAILQA NKLNDPAAVR KRSKLMLPPP  300
QISDQELEEI AKMGYASDLT SGNEELAEGS GATRALVADY SQTPRRGMTP LRTPQRTPAG  360
KVDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKREMQTPNP LATPLSSPGP  420
AGLTPRIGMT PSRDGPGGTP KFTPFRDDLH INEDVEMQDS AKLELRRQEE MRRNLRSGLT  480
NLPLPKNEYQ IVMQPIPEEN EEIEEKIEED MSDKIAKDKA REQARMEALM KKRSKVLQRE  540
LPRPPAASLE LIKNLLVKGD EDKSSFVPPT PFEQADEMIN KELLSLLEHD NAKYPLNEKS  600
DKVKVKGVKR AENGKSSNSI PEIEEFDEAE LSEANSLIKE EMKFLRVAMG HENESFDDFV  660
KARDACQEDL MFFPARNTYG LASVAGSSEK LAALQNEFEI VKKKMDDEAK KATRLEQKIK  720
VLTHGYQMRG EKLWSQIEAT FKLTGTASIE LECFQALQKQ ERAAASYRID NLIDEVNKQK  780
QLERTLQDRY RDLLVEEERI QRMLEEHKAR LQAEEEMAAR KRAEEETAAS IRAAEEEMAA  840
RKRAEEETAA SIRAAEEEMA ARKRAEEETA ASIRAAEDEM TARKPVEEEM AASICAAEDE  900
MAASICAAED EMAARKRAEE EMAASICAAE DEMAARNRAE DEMAASILAA EDEMAARKLA  960
EDEMAASIHA AEDKMTARKL AGEEMAARNH AAEDEMSARK QADEEEIAAG DLMSEVEETV  1020
QNHAIDAEAG ATKDASDAIN HIHKQLTPPS DEAPAEFEEP VEIPASNKNS VLNDDELQNP  1080
KAAEEATKHP TLNEKSTEDN LSQNQSEITN PDQNVEFISE LSVDRLPNKQ LEVEAVALSE  1140
SISDGEKKPE IDSDVKLPPV VSPNEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDNRHRRRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein