PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028554455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 388aa MW: 42235.4 Da PI: 8.4914 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.4 | 3.3e-10 | 45 | 69 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C +++rtGtC yG+rC+++H+ XP_028554455.1 45 GKRDCAYYLRTGTCGYGERCRYNHP 69 7899********************8 PP | |||||||
2 | zf-CCCH | 31.2 | 3.8e-10 | 92 | 118 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 y+++ C ++++tGtCk+G++Ck++H++ XP_028554455.1 92 YGQPFCEYYLKTGTCKFGSTCKYHHPR 118 56666********************96 PP | |||||||
3 | zf-CCCH | 40.7 | 4e-13 | 138 | 164 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++e+C++f++tG Ck+G +CkF+H++ XP_028554455.1 138 PGEEECSYFMKTGKCKFGLTCKFHHPQ 164 589**********************97 PP | |||||||
4 | zf-CCCH | 40.2 | 5.6e-13 | 296 | 322 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG+Ck+G++Ck++H+p XP_028554455.1 296 PGQPECQFYMRTGECKFGATCKYHHPP 322 5789*********************97 PP | |||||||
5 | zf-CCCH | 28.9 | 1.9e-09 | 345 | 367 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++a+ G CkyG +CkF H+ XP_028554455.1 345 QICAYYAQHGACKYGRTCKFDHP 367 58********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence |
MDPYSGEGTH PDPDSGLQES MWRLGLGGGG NRSGGWGSAF PERPGKRDCA YYLRTGTCGY 60 GERCRYNHPH DRSATQVAGA ARLVAGEYPE RYGQPFCEYY LKTGTCKFGS TCKYHHPRQG 120 SGSVQPVSLN YYGYPLRPGE EECSYFMKTG KCKFGLTCKF HHPQPTSASV SPPAPVFYPT 180 MQPPSIATPP QYPEVGVWQV GRSSSSVSGS YVPSSYAPML FSPRVLPVHG WSPYPTPINE 240 TASSGTQQSA RVEPLYGQPS QLSPSAPAYS GLYPLVTSFV GPSTSTQKEQ SLPQRPGQPE 300 CQFYMRTGEC KFGATCKYHH PPNWSIPATN CALSPLGLPL RPGAQICAYY AQHGACKYGR 360 TCKFDHPIST VGYNPASLID IPAAPYPF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-126 | C3H family protein |