PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028554455.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 388aa    MW: 42235.4 Da    PI: 8.4914
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028554455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.3e-104569226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    + + C +++rtGtC yG+rC+++H+
  XP_028554455.1 45 GKRDCAYYLRTGTCGYGERCRYNHP 69
                    7899********************8 PP

2zf-CCCH31.23.8e-1092118127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     y+++ C ++++tGtCk+G++Ck++H++
  XP_028554455.1  92 YGQPFCEYYLKTGTCKFGSTCKYHHPR 118
                     56666********************96 PP

3zf-CCCH40.74e-13138164127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++e+C++f++tG Ck+G +CkF+H++
  XP_028554455.1 138 PGEEECSYFMKTGKCKFGLTCKFHHPQ 164
                     589**********************97 PP

4zf-CCCH40.25.6e-13296322127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f++rtG+Ck+G++Ck++H+p
  XP_028554455.1 296 PGQPECQFYMRTGECKFGATCKYHHPP 322
                     5789*********************97 PP

5zf-CCCH28.91.9e-09345367426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      +C ++a+ G CkyG +CkF H+
  XP_028554455.1 345 QICAYYAQHGACKYGRTCKFDHP 367
                     58********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MDPYSGEGTH PDPDSGLQES MWRLGLGGGG NRSGGWGSAF PERPGKRDCA YYLRTGTCGY  60
GERCRYNHPH DRSATQVAGA ARLVAGEYPE RYGQPFCEYY LKTGTCKFGS TCKYHHPRQG  120
SGSVQPVSLN YYGYPLRPGE EECSYFMKTG KCKFGLTCKF HHPQPTSASV SPPAPVFYPT  180
MQPPSIATPP QYPEVGVWQV GRSSSSVSGS YVPSSYAPML FSPRVLPVHG WSPYPTPINE  240
TASSGTQQSA RVEPLYGQPS QLSPSAPAYS GLYPLVTSFV GPSTSTQKEQ SLPQRPGQPE  300
CQFYMRTGEC KFGATCKYHH PPNWSIPATN CALSPLGLPL RPGAQICAYY AQHGACKYGR  360
TCKFDHPIST VGYNPASLID IPAAPYPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-126C3H family protein